RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
A Stamatakis - Bioinformatics, 2006
The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease
J Lamb, ED Crawford, D Peck, JW Modell, IC Blat… - science, 2006
C Stark, BJ Breitkreutz, T Reguly, L Boucher… - Nucleic acids …, 2006
ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context
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