| Clustering of high throughput gene expression data H Pirim, B Ekşioğlu, AD Perkins, Ç Yüceer Computers & operations research 39 (12), 3046-3061, 2012 | 141 | 2012 |
| Extracting gene networks for low-dose radiation using graph theoretical algorithms BH Voy, JA Scharff, AD Perkins, AM Saxton, B Borate, EJ Chesler, ... PLoS computational biology 2 (7), e89, 2006 | 136 | 2006 |
| Dynamics of microRNAs in bull spermatozoa A Govindaraju, A Uzun, LS Robertson, MO Atli, A Kaya, E Topper, ... Reproductive Biology and Endocrinology 10, 1-10, 2012 | 113 | 2012 |
| Threshold selection in gene co-expression networks using spectral graph theory techniques AD Perkins, MA Langston BMC bioinformatics 10, 1-11, 2009 | 106 | 2009 |
| Genome‐Wide Association Mapping of Aspergillus flavus and Aflatoxin Accumulation Resistance in Maize ML Warburton, JD Tang, GL Windham, LK Hawkins, SC Murray, W Xu, ... Crop Science 55 (5), 1857-1867, 2015 | 74 | 2015 |
| Genome‐level analysis of genetic regulation of liver gene expression networks D Gatti, A Maki, EJ Chesler, R Kirova, O Kosyk, L Lu, KF Manly, ... Hepatology 46 (2), 548-557, 2007 | 73 | 2007 |
| Molecular physiognomies and applications of adipose-derived stem cells F Uzbas, ID May, AM Parisi, SK Thompson, A Kaya, AD Perkins, E Memili Stem Cell Reviews and Reports 11, 298-308, 2015 | 63 | 2015 |
| A systematic comparison of genome-scale clustering algorithms JJ Jay, JD Eblen, Y Zhang, M Benson, AD Perkins, AM Saxton, BH Voy, ... BMC bioinformatics 13, 1-12, 2012 | 63 | 2012 |
| Using genome-wide associations to identify metabolic pathways involved in maize aflatoxin accumulation resistance JD Tang, A Perkins, WP Williams, ML Warburton BMC genomics 16, 1-12, 2015 | 62 | 2015 |
| Comparative genomics of Aeromonas veronii: Identification of a pathotype impacting aquaculture globally HC Tekedar, S Kumru, J Blom, AD Perkins, MJ Griffin, H Abdelhamed, ... PloS one 14 (8), e0221018, 2019 | 60 | 2019 |
| A module-based analytical strategy to identify novel disease-associated genes shows an inhibitory role for interleukin 7 Receptor in allergic inflammation R Mobini, BA Andersson, J Erjefält, M Hahn-Zoric, MA Langston, ... BMC systems biology 3, 1-11, 2009 | 51 | 2009 |
| Gene expression analysis of copper tolerance and wood decay in the brown rot fungus Fibroporia radiculosa JD Tang, LA Parker, AD Perkins, TS Sonstegard, SG Schroeder, ... Applied and environmental microbiology 79 (5), 1523-1533, 2013 | 49 | 2013 |
| Acetylation and methylation of sperm histone 3 lysine 27 (H3K27ac and H3K27me3) are associated with bull fertility NA Kutchy, ESB Menezes, A Chiappetta, W Tan, RW Wills, A Kaya, ... Andrologia 50 (3), e12915, 2018 | 43 | 2018 |
| Short-read sequencing for genomic analysis of the brown rot fungus Fibroporia radiculosa JD Tang, AD Perkins, TS Sonstegard, SG Schroeder, SC Burgess, ... Applied and environmental microbiology 78 (7), 2272-2281, 2012 | 42 | 2012 |
| Innovative computational methods for transcriptomic data analysis: A case study in the use of FPT for practical algorithm design and implementation MA Langston, AD Perkins, AM Saxton, JA Scharff, BH Voy The Computer Journal 51 (1), 26-38, 2008 | 41 | 2008 |
| Whole blood transcriptomic analysis of beef cattle at arrival identifies potential predictive molecules and mechanisms that indicate animals that naturally resist bovine … MA Scott, AR Woolums, CE Swiderski, AD Perkins, B Nanduri, DR Smith, ... PLoS One 15 (1), e0227507, 2020 | 40 | 2020 |
| Gender differences in inflammatory proteins and pathways in seasonal allergic rhinitis F Barrenäs, B Andersson, LO Cardell, M Langston, R Mobini, A Perkins, ... Cytokine 42 (3), 325-329, 2008 | 40 | 2008 |
| Relating significance and relations of differentially expressed genes in response to Aspergillus flavus infection in maize MC Asters, WP Williams, AD Perkins, JE Mylroie, GL Windham, X Shan Scientific Reports 4 (1), 4815, 2014 | 35 | 2014 |
| Toward a more holistic method of genome assembly assessment A Thrash, F Hoffmann, A Perkins BMC bioinformatics 21 (Suppl 4), 249, 2020 | 29 | 2020 |
| Testis specific histone 2B is associated with sperm chromatin dynamics and bull fertility-a pilot study NA Kutchy, A Velho, ESB Menezes, M Jacobsen, G Thibaudeau, RW Wills, ... Reproductive Biology and Endocrinology 15, 1-14, 2017 | 20 | 2017 |
