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Urminder Singh
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PLncPRO for prediction of long non-coding RNAs (lncRNAs) in plants and its application for discovery of abiotic stress-responsive lncRNAs in rice and chickpea
U Singh, N Khemka, MS Rajkumar, R Garg, M Jain
Nucleic acids research 45 (22), e183-e183, 2017
1112017
Role of miR-2392 in driving SARS-CoV-2 infection
JT McDonald, FJ Enguita, D Taylor, RJ Griffin, W Priebe, MR Emmett, ...
Cell reports 37 (3), 2021
662021
Core mitochondrial genes are down-regulated during SARS-CoV-2 infection of rodent and human hosts
JW Guarnieri, JM Dybas, H Fazelinia, MS Kim, J Frere, Y Zhang, ...
Science translational medicine 15 (708), eabq1533, 2023
562023
orfipy: a fast and flexible tool for extracting ORFs
U Singh, ES Wurtele
Bioinformatics, 2021
472021
MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets
U Singh, M Hur, K Dorman, ES Wurtele
Nucleic acids research 48 (4), e23-e23, 2020
382020
phylostratr: a framework for phylostratigraphy
Z Arendsee, J Li, U Singh, A Seetharam, K Dorman, ES Wurtele
Bioinformatics 35 (19), 3617-3627, 2019
312019
Targeted down regulation of core mitochondrial genes during SARS-CoV-2 infection
JW Guarnieri, JM Dybas, H Fazelinia, MS Kim, J Frere, Y Zhang, ...
BioRxiv, 2022
302022
System-wide transcriptome damage and tissue identity loss in COVID-19 patients
J Park, J Foox, T Hether, DC Danko, S Warren, Y Kim, J Reeves, DJ Butler, ...
Cell Reports Medicine 3 (2), 2022
302022
How new genes are born
U Singh, E Syrkin Wurtele
Elife 9, e55136, 2020
292020
Genome-Wide Transcript Profiling Reveals an Auxin-Responsive Transcription Factor, OsAP2/ERF-40, Promoting Rice Adventitious Root Development
A Neogy, T Garg, A Kumar, AK Dwivedi, H Singh, U Singh, Z Singh, ...
Plant and Cell Physiology 60 (10), 2343-2355, 2019
292019
pyrpipe: a Python package for RNA-Seq workflows
U Singh, J Li, A Seetharam, ES Wurtele
NAR genomics and bioinformatics 3 (2), lqab049, 2021
212021
Foster thy young: enhanced prediction of orphan genes in assembled genomes
J Li, U Singh, P Bhandary, J Campbell, Z Arendsee, AS Seetharam, ...
Nucleic Acids Research 50 (7), e37-e37, 2022
192022
African Americans and European Americans exhibit distinct gene expression patterns across tissues and tumors associated with immunologic functions and environmental exposures
U Singh, KM Hernandez, BJ Aronow, ES Wurtele
Scientific reports 11 (1), 9905, 2021
192021
Ensemble of deep long short term memory networks for labelling origin of replication sequences
U Singh, S Chauhan, A Krishnamachari, L Vig
2015 IEEE International Conference on Data Science and Advanced Analytics …, 2015
162015
fagin: synteny-based phylostratigraphy and finer classification of young genes
Z Arendsee, J Li, U Singh, P Bhandary, A Seetharam, ES Wurtele
BMC bioinformatics 20, 1-14, 2019
152019
Landscape of the dark transcriptome revealed through re-mining massive RNA-Seq data
J Li, U Singh, Z Arendsee, ES Wurtele
Frontiers in Genetics 12, 722981, 2021
132021
Systemic tissue and cellular disruption from SARS-CoV-2 infection revealed in COVID-19 autopsies and spatial omics tissue maps
J Park, J Foox, T Hether, D Danko, S Warren, Y Kim, J Reeves, DJ Butler, ...
bioRxiv, 2021.03. 08.434433, 2021
132021
Maximizing prediction of orphan genes in assembled genomes
A Seetharam, U Singh, J Li, P Bhandary, Z Arendsee, ES Wurtele
BioRxiv, 2019.12. 17.880294, 2019
82019
The great deceiver: miR-2392’s hidden role in driving SARS-CoV-2 infection
JT McDonald, FJ Enguita, D Taylor, RA Bowen, RJ Griffin, W Priebe, ...
bioRxiv, 2021.04. 23.441024, 2021
72021
Recycling RNA-seq data to identify candidate orphan genes for experimental analysis
J Li, Z Arendsee, U Singh, ES Wurtele
BioRxiv, 671263, 2019
52019
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Articles 1–20