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David C Danko
David C Danko
Biotia Inc
Dirección de correo verificada de biotia.io - Página principal
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Comprehensive benchmarking and ensemble approaches for metagenomic classifiers
ABR McIntyre, R Ounit, E Afshinnekoo, RJ Prill, E Hénaff, N Alexander, ...
Genome biology 18, 1-19, 2017
3062017
A global metagenomic map of urban microbiomes and antimicrobial resistance
D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ...
Cell 184 (13), 3376-3393. e17, 2021
240*2021
Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions
D Butler, C Mozsary, C Meydan, J Foox, J Rosiene, A Shaiber, D Danko, ...
Nature communications 12 (1), 1660, 2021
224*2021
A synthesis of bacterial and archaeal phenotypic trait data
JS Madin, DA Nielsen, M Brbic, R Corkrey, D Danko, K Edwards, ...
Scientific data 7 (1), 170, 2020
692020
Entropy-scaling search of massive biological data
YW Yu, NM Daniels, DC Danko, B Berger
Cell systems 1 (2), 130-140, 2015
622015
The microbiomes of seven lichen genera reveal host specificity, a reduced core community and potential as source of antimicrobials
MA Sierra, DC Danko, TA Sandoval, G Pishchany, B Moncada, R Kolter, ...
Frontiers in microbiology 11, 512755, 2020
502020
System-wide transcriptome damage and tissue identity loss in COVID-19 patients
J Park, J Foox, T Hether, DC Danko, S Warren, Y Kim, J Reeves, DJ Butler, ...
Cell Reports Medicine 3 (2), 2022
37*2022
Characterization of the public transit air microbiome and resistome reveals geographical specificity
MHY Leung, X Tong, KO Bøifot, D Bezdan, DJ Butler, DC Danko, J Gohli, ...
Microbiome 9 (1), 112, 2021
372021
Minerva: an alignment-and reference-free approach to deconvolve linked-reads for metagenomics
DC Danko, D Meleshko, D Bezdan, C Mason, I Hajirasouliha
Genome research 29 (1), 116-124, 2019
332019
Illuminating genetic mysteries of the dead sea scrolls
S Anava, M Neuhof, H Gingold, O Sagy, A Munters, EM Svensson, ...
Cell 181 (6), 1218-1231. e27, 2020
242020
The Microbe Directory: An annotated, searchable inventory of microbes’ characteristics
CEM Heba Shaaban, David A. Westfall, Rawhi Mohammad, David Danko, Daniela ...
Gates Open Research, 2018
202018
Epsilon toxin–producing Clostridium perfringens colonize the multiple sclerosis gut microbiome overcoming CNS immune privilege
Y Ma, D Sannino, JR Linden, S Haigh, B Zhao, JB Grigg, P Zumbo, ...
The Journal of clinical investigation 133 (9), 2023
19*2023
Sequencing of circulating microbial cell-free DNA can identify pathogens in periprosthetic joint infections
AP Echeverria, IS Cohn, DC Danko, S Shanaj, L Blair, D Hollemon, ...
JBJS 103 (18), 1705-1712, 2021
192021
A comprehensive metagenomics framework to characterize organisms relevant for planetary protection
DC Danko, MA Sierra, JN Benardini, L Guan, JM Wood, N Singh, ...
Microbiome 9, 1-15, 2021
172021
Obesity and ethnicity alter gene expression in skin
JM Walker, S Garcet, JO Aleman, CE Mason, D Danko, D Butler, S Zuffa, ...
Scientific reports 10 (1), 14079, 2020
142020
Systemic tissue and cellular disruption from SARS-CoV-2 infection revealed in COVID-19 autopsies and spatial omics tissue maps
J Park, J Foox, T Hether, D Danko, S Warren, Y Kim, J Reeves, DJ Butler, ...
bioRxiv, 2021.03. 08.434433, 2021
132021
The microbe directory v2. 0: An expanded database of ecological and phenotypical features of microbes
MA Sierra, C Bhattacharya, K Ryon, S Meierovich, H Shaaban, D Westfall, ...
BioRxiv, 2019.12. 20.860569, 2019
112019
Metagenomic characterization of bacterial community and antibiotic resistance genes found in the mass transit system in Seoul, South Korea
RB Guevarra, J Hwang, H Lee, HJ Kim, Y Lee, D Danko, KA Ryon, ...
Ecotoxicology and Environmental Safety 246, 114176, 2022
82022
Characterization of spacesuit associated microbial communities and their implications for NASA missions
D Danko, GB Malli Mohan, MA Sierra, M Rucker, NK Singh, AB Regberg, ...
Frontiers in Microbiology 12, 608478, 2021
82021
Annotating unknown species of urban microorganisms on a global scale unveils novel functional diversity and local environment association
J Wu, D Danko, E Afshinnekoo, D Bezdan, M Bhattacharyya, ...
Environmental Research 207, 112183, 2022
72022
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