Rongbin Zheng
Rongbin Zheng
Postdoc @ Boston Children's Hospital / Harvard Medical School
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Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis
R Zheng, C Wan, S Mei, Q Qin, Q Wu, H Sun, CH Chen, M Brown, ...
Nucleic acids research 47 (D1), D729-D735, 2019
TISCH: a comprehensive web resource enabling interactive single-cell transcriptome visualization of tumor microenvironment
D Sun, J Wang, Y Han, X Dong, J Ge, R Zheng, X Shi, B Wang, Z Li, ...
Nucleic acids research 49 (D1), D1420-D1430, 2021
Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse
S Mei, Q Qin, Q Wu, H Sun, R Zheng, C Zang, M Zhu, J Wu, X Shi, L Taing, ...
Nucleic acids research, gkw983, 2016
Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data
Q Qin, J Fan, R Zheng, C Wan, S Mei, Q Wu, H Sun, M Brown, J Zhang, ...
Genome biology 21, 1-14, 2020
Cistrome cancer: a web resource for integrative gene regulation modeling in cancer
S Mei, CA Meyer, R Zheng, Q Qin, Q Wu, P Jiang, B Li, X Shi, B Wang, ...
Cancer research 77 (21), e19-e22, 2017
Cistrome-GO: a web server for functional enrichment analysis of transcription factor ChIP-seq peaks
S Li, C Wan, R Zheng, J Fan, X Dong, CA Meyer, XS Liu
Nucleic acids research 47 (W1), W206-W211, 2019
Effect of acrylamide on oocyte nuclear maturation and cumulus cells apoptosis in mouse in vitro
S Liu, L Jiang, T Zhong, S Kong, R Zheng, F Kong, C Zhang, L Zhang, ...
PloS one 10 (8), e0135818, 2015
MUC1-C drives stemness in progression of colitis to colorectal cancer
W Li, N Zhang, C Jin, MD Long, H Rajabi, Y Yasumizu, A Fushimi, ...
JCI insight 5 (12), 2020
Determinants of transcription factor regulatory range
CH Chen, R Zheng, C Tokheim, X Dong, J Fan, C Wan, Q Tang, M Brown, ...
Nature communications 11 (1), 2472, 2020
Mebocost: metabolic cell-cell communication modeling by single cell transcriptome
R Zheng, Y Zhang, T Tsuji, L Zhang, YH Tseng, K Chen
BioRxiv, 2022.05. 30.494067, 2022
Epsin nanotherapy regulates cholesterol transport to fortify atheroma regression
K Cui, X Gao, B Wang, H Wu, K Arulsamy, Y Dong, Y Xiao, X Jiang, ...
Circulation research 132 (1), e22-e42, 2023
ViMIC: a database of human disease-related virus mutations, integration sites and cis-effects
Y Wang, Y Tong, Z Zhang, R Zheng, D Huang, J Yang, H Zong, F Tan, ...
Nucleic Acids Research 50 (D1), D918-D927, 2022
Cistrome Data Browser and Toolkit: analyzing human and mouse genomic data using compendia of ChIP-seq and chromatin accessibility data
R Zheng, X Dong, C Wan, X Shi, X Zhang, CA Meyer
Quantitative Biology 8, 267-276, 2020
Retinoblastoma protein as an intrinsic BRD4 inhibitor modulates small molecule BET inhibitor sensitivity in cancer
D Ding, R Zheng, Y Tian, R Jimenez, X Hou, SJ Weroha, L Wang, L Shi, ...
Nature communications 13 (1), 6311, 2022
Aroclor 1254 impairs the development of ovarian follicles by inducing the apoptosis of granulosa cells
S Liu, C Yu, D Cheng, X Han, L Jiang, R Zheng, X Meng, T Zhang, L Huo
Toxicology Research 4 (2), 302-310, 2015
Cancer Cell Resistance to IFNγ can occur via enhanced double-strand break repair pathway activity
T Han, X Wang, S Shi, W Zhang, J Wang, Q Wu, Z Li, J Fu, R Zheng, ...
Cancer Immunology Research 11 (3), 381-398, 2023
StripeDiff: model-based algorithm for differential analysis of chromatin stripe
K Gupta, G Wang, S Zhang, X Gao, R Zheng, Y Zhang, Q Meng, L Zhang, ...
Science Advances 8 (49), eabk2246, 2022
GIDB: a knowledge database for the automated curation and multidimensional analysis of molecular signatures in gastrointestinal cancer
Y Wang, Y Wang, S Wang, Y Tong, L Jin, H Zong, R Zheng, J Yang, ...
Database 2019, baz051, 2019
Comprehensive analysis of intercellular communication in the thermogenic adipose niche
F Shamsi, R Zheng, LL Ho, K Chen, YH Tseng
Communications Biology 6 (1), 761, 2023
A knowledge empowered explainable gene ontology fingerprint approach to improve gene functional explication and prediction
Y Wang, H Zong, F Yang, Y Tong, Y Xie, Z Zhang, H Huang, R Zheng, ...
Iscience 26 (4), 2023
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