| ABySS: a parallel assembler for short read sequence data JT Simpson, K Wong, SD Jackman, JE Schein, SJM Jones, İ Birol Genome research 19 (6), 1117-1123, 2009 | 4047 | 2009 |
| Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma RD Morin, M Mendez-Lago, AJ Mungall, R Goya, KL Mungall, RD Corbett, ... Nature 476 (7360), 298-303, 2011 | 1782 | 2011 |
| De novo assembly and analysis of RNA-seq data G Robertson, J Schein, R Chiu, R Corbett, M Field, SD Jackman, ... Nature methods 7 (11), 909-912, 2010 | 1133 | 2010 |
| The genetic landscape of high-risk neuroblastoma TJ Pugh, O Morozova, EF Attiyeh, S Asgharzadeh, JS Wei, D Auclair, ... Nature genetics 45 (3), 279-284, 2013 | 1112 | 2013 |
| Subgroup-specific structural variation across 1,000 medulloblastoma genomes PA Northcott, DJH Shih, J Peacock, L Garzia, A Sorana Morrissy, ... Nature 488 (7409), 49-56, 2012 | 912 | 2012 |
| Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ... Gigascience 2 (1), 2047-217X-2-10, 2013 | 764 | 2013 |
| Assemblathon 1: a competitive assessment of de novo short read assembly methods D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ... Genome research 21 (12), 2224-2241, 2011 | 611 | 2011 |
| ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter SD Jackman, BP Vandervalk, H Mohamadi, J Chu, S Yeo, SA Hammond, ... Genome research 27 (5), 768-777, 2017 | 563 | 2017 |
| De novo transcriptome assembly with ABySS I Birol, SD Jackman, CB Nielsen, JQ Qian, R Varhol, G Stazyk, RD Morin, ... Bioinformatics 25 (21), 2872-2877, 2009 | 499 | 2009 |
| Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data I Birol, A Raymond, SD Jackman, S Pleasance, R Coope, GA Taylor, ... Bioinformatics 29 (12), 1492-1497, 2013 | 428 | 2013 |
| Concurrent CIC mutations, IDH mutations and 1p/19q loss distinguish oligodendrogliomas from other cancers S Yip, YS Butterfield, O Morozova, S Chittaranjan, MD Blough, J An, I Birol, ... The Journal of Pathology 226 (1), 7-16, 2012 | 324 | 2012 |
| Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest CI Keeling, MMS Yuen, NY Liao, T Roderick Docking, SK Chan, ... Genome biology 14, 1-20, 2013 | 295 | 2013 |
| Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism RL Warren, CI Keeling, MMS Yuen, A Raymond, GA Taylor, ... The Plant Journal 83 (2), 189-212, 2015 | 221 | 2015 |
| A robust benchmark for detection of germline large deletions and insertions JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ... Nature biotechnology 38 (11), 1347-1355, 2020 | 219 | 2020 |
| Sealer: a scalable gap-closing application for finishing draft genomes D Paulino, RL Warren, BP Vandervalk, A Raymond, SD Jackman, I Birol BMC bioinformatics 16 (1), 1-8, 2015 | 153 | 2015 |
| On the representation of de Bruijn graphs R Chikhi, A Limasset, S Jackman, JT Simpson, P Medvedev Research in Computational Molecular Biology 8394, 35-55, 2014 | 136 | 2014 |
| Whole genome duplication and enrichment of metal cation transporters revealed by de novo genome sequencing of extremely halotolerant black yeast Hortaea werneckii M Lenassi, C Gostinčar, S Jackman, M Turk, I Sadowski, C Nislow, ... PLoS One 8 (8), e71328, 2013 | 107 | 2013 |
| BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters J Chu, S Sadeghi, A Raymond, SD Jackman, KM Nip, R Mar, ... Bioinformatics 30 (23), 3402-3404, 2014 | 104 | 2014 |
| ABySS-Explorer: visualizing genome sequence assemblies CB Nielsen, SD Jackman, I Birol, SJM Jones IEEE Transactions on Visualization and Computer Graphics 15 (6), 881-888, 2009 | 104 | 2009 |
| Tigmint: correcting assembly errors using linked reads from large molecules SD Jackman, L Coombe, J Chu, RL Warren, BP Vandervalk, S Yeo, Z Xue, ... BMC bioinformatics 19 (1), 1-10, 2018 | 94 | 2018 |
Inanc BirolGenome Sciences Centre, BC Cancer AgencyVerified email at bcgsc.ca
