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Brian Cleary
Brian Cleary
Assistant Professor, Boston University
Verified email at bu.edu - Homepage
Title
Cited by
Cited by
Year
Optimal-transport analysis of single-cell gene expression identifies developmental trajectories in reprogramming
G Schiebinger*, J Shu*, M Tabaka*, B Cleary*, V Subramanian, ...
Cell 176 (4), 928-943. e22, 2019
738*2019
Systematic mapping of functional enhancer–promoter connections with CRISPR interference
CP Fulco, M Munschauer, R Anyoha, G Munson, SR Grossman, EM Perez, ...
Science 354 (6313), 769-773, 2016
5802016
Detection of low-abundance bacterial strains in metagenomic datasets by eigengenome partitioning
B Cleary, IL Brito, K Huang, D Gevers, T Shea, S Young, EJ Alm
Nature biotechnology 33 (10), 1053, 2015
1642015
LAMP-Seq enables sensitive, multiplexed COVID-19 diagnostics using molecular barcoding
KU Ludwig, RM Schmithausen, D Li, ML Jacobs, R Hollstein, ...
Nature Biotechnology 39 (12), 1556-1562, 2021
136*2021
Multimodal pooled Perturb-CITE-seq screens in patient models define mechanisms of cancer immune evasion
CJ Frangieh, JC Melms, PI Thakore, KR Geiger-Schuller, P Ho, ...
Nature Genetics, 1-10, 2021
1352021
High resolution time series reveals cohesive but short-lived communities in coastal plankton
AM Martin-Platero*, B Cleary*, K Kauffman, SP Preheim, DJ McGillicuddy, ...
Nature communications 9 (1), 1-11, 2018
1332018
Efficient Generation of Transcriptomic Profiles by Random Composite Measurements
B Cleary, L Cong, A Cheung, ES Lander, A Regev
Cell 171 (6), 1424-1436. e18, 2017
123*2017
Using viral load and epidemic dynamics to optimize pooled testing in resource-constrained settings
B Cleary*, JA Hay*, B Blumenstiel, M Harden, M Cipicchio, J Bezney, ...
Science Translational Medicine, 2021
70*2021
Compressed sensing for highly efficient imaging transcriptomics
B Cleary, B Simonton, J Bezney, E Murray, S Alam, A Sinha, E Habibi, ...
Nature Biotechnology 39 (8), 936-942, 2021
45*2021
Deep Unrolled Recovery in Sparse Biological Imaging: Achieving fast, accurate results
YB Sahel, JP Bryan, B Cleary, SL Farhi, YC Eldar
IEEE Signal Processing Magazine 39 (2), 45-57, 2022
192022
Inferring gene regulation from stochastic transcriptional variation across single cells at steady state
A Gupta, JD Martin-Rufino, TR Jones, V Subramanian, X Qiu, EI Grody, ...
Proceedings of the National Academy of Sciences 119 (34), e2207392119, 2022
162022
Scalable genetic screening for regulatory circuits using compressed Perturb-seq
D Yao, L Binan, J Bezney, B Simonton, J Freedman, CJ Frangieh, K Dey, ...
Nature Biotechnology, 1-14, 2023
14*2023
The necessity and power of random, under-sampled experiments in biology
B Cleary, A Regev
arXiv preprint arXiv:2012.12961, 2020
122020
Group testing via hypergraph factorization applied to COVID-19
D Hong, R Dey, X Lin, B Cleary, E Dobriban
Nature Communications 13 (1), 1-13, 2022
9*2022
Convergence of coronary artery disease genes onto endothelial cell programs
GR Schnitzler, H Kang, S Fang, RS Angom, VS Lee-Kim, XR Ma, R Zhou, ...
Nature, 1-9, 2024
7*2024
Sparse Recovery Of Imaging Transcriptomics Data
JP Bryan, B Cleary, SL Farhi, YC Eldar
2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), 802-806, 2021
72021
Extrapolating missing antibody-virus measurements across serological studies
T Einav, B Cleary
Cell Systems 13 (7), 561-573. e5, 2022
62022
Simultaneous CRISPR screening and spatial transcriptomics reveals intracellular, intercellular, and functional transcriptional circuits.
L Binan, S Danquah, V Valakh, B Simonton, J Bezney, R Nehme, ...
bioRxiv, 2023.11. 30.569494, 2023
42023
Compressed phenotypic screens for complex multicellular models and high-content assays
BE Mead, C Kummerlowe, N Liu, WE Kattan, T Cheng, JH Cheah, ...
bioRxiv, 2023.01. 23.525189, 2023
12023
Systematic Perturb-seq to discover endothelial cell programs related to CAD
GR Schnitzler, H Kang, G Munson, P Guckelberger, D Bergman, B Cleary, ...
2024
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