Steven Salzberg

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Mihaela PerteaAssociate Professor, Johns Hopkins UniversityDirección de correo verificada de jhu.edu
Ben LangmeadAssociate Professor of Computer Science, Johns Hopkins UniversityDirección de correo verificada de cs.jhu.edu
Daehwan KimUniversity of Texas Southwestern Medical CenterDirección de correo verificada de UTSouthwestern.edu
Cole TrapnellAssociate Professor, Dept. of Genome Sciences, University of WashingtonDirección de correo verificada de uw.edu
Daniela PuiuJohns Hopkins UniversityDirección de correo verificada de jhu.edu
Aleksey V ZiminResearch Scientist, Department of Biomedical Engineering, Johns Hopkins UnviersityDirección de correo verificada de jhu.edu
Mihai PopProfessor of Computer Science, University of Maryland, College ParkDirección de correo verificada de umd.edu
Owen WhiteDirector of Bioinformatics, Institute for Genome Sciences, Professor, Department of Epidemiology and Preventative, University ofDirección de correo verificada de som.umaryland.edu
Adam M. PhillippyDirector, Center for Genomics and Data Science Research, NHGRI, NIHDirección de correo verificada de nih.gov
Florian P BreitwieserPrincipal Software Engineer at SOPHiA GeneticsDirección de correo verificada de jhu.edu
Michael C. SchatzBloomberg Distinguished Professor, Johns Hopkins UniversityDirección de correo verificada de cs.jhu.edu
David R KelleyCalico LabsDirección de correo verificada de calicolabs.com
David NealeUniversity California, Davis USDADirección de correo verificada de ucdavis.edu
James YorkeDist. Univ. Research Prof of Math and Physics, Univ. of MarylandDirección de correo verificada de umd.edu
Jennifer Lu, Ph. D.Staff Scientist, Johns Hopkins UniversityDirección de correo verificada de jhmi.edu
Brian HaasBroad InstituteDirección de correo verificada de broadinstitute.org
Charles H. LangleyProfessor, University of California - DavisDirección de correo verificada de ucdavis.edu
Derrick WoodVeridian InformaticsDirección de correo verificada de cs.jhu.edu
Jonathan A. EisenProfessor, University of California, Davis (UC Davis), Department of Evolution and EcologyDirección de correo verificada de ucdavis.edu
Sreerama MurthyCEO & Chief Data Scientist, QuadratyxDirección de correo verificada de quadratyx.com

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Steven Salzberg

Bloomberg Distinguished Professor, Johns Hopkins University

Dirección de correo verificada de jhu.edu - Página principal

Computational Biology Genomics Bioinformatics Metagenomics Biomedical Data Science


Título Ordenar por citas Ordenar por año Ordenar por título	Citado por Citado por	Año
Fast gapped-read alignment with Bowtie 2 B Langmead, SL Salzberg Nature methods 9 (4), 357-359, 2012	49268	2012
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome B Langmead, C Trapnell, M Pop, SL Salzberg Genome biology 10, 1-10, 2009	23841	2009
The sequence of the human genome JC Venter, MD Adams, EW Myers, PW Li, RJ Mural, et al. Science 291 (5507), 1304-1351, 2001	20691	2001
HISAT: a fast spliced aligner with low memory requirements D Kim, B Langmead, SL Salzberg Nature methods 12 (4), 357-360, 2015	18047	2015
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation C Trapnell, BA Williams, G Pertea, A Mortazavi, G Kwan, MJ Van Baren, ... Nature biotechnology 28 (5), 511-515, 2010	15741	2010
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions D Kim, G Pertea, C Trapnell, H Pimentel, R Kelley, SL Salzberg Genome biology 14, 1-13, 2013	13469	2013
TopHat: discovering splice junctions with RNA-Seq C Trapnell, L Pachter, SL Salzberg Bioinformatics 25 (9), 1105-1111, 2009	13454	2009
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks C Trapnell, A Roberts, L Goff, G Pertea, D Kim, DR Kelley, H Pimentel, ... Nature protocols 7 (3), 562-578, 2012	13095	2012
FLASH: fast length adjustment of short reads to improve genome assemblies T Magoč, SL Salzberg Bioinformatics 27 (21), 2957-2963, 2011	12862	2011
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. GI Arabidopsis Nature 408 (6814), 796, 2000	11225	2000
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads M Pertea, GM Pertea, CM Antonescu, TC Chang, JT Mendell, SL Salzberg Nature biotechnology 33 (3), 290-295, 2015	9536	2015
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype D Kim, JM Paggi, C Park, C Bennett, SL Salzberg Nature biotechnology 37 (8), 907-915, 2019	8420	2019
Versatile and open software for comparing large genomes S Kurtz, A Phillippy, AL Delcher, M Smoot, M Shumway, C Antonescu, ... Genome biology 5 (2), R12, 2004	5643	2004
Genome sequence of the human malaria parasite Plasmodium falciparum MJ Gardner, N Hall, E Fung, O White, M Berriman, RW Hyman, JM Carlton, ... Nature 419 (6906), 498-511, 2002	5523	2002
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown M Pertea, D Kim, GM Pertea, JT Leek, SL Salzberg Nature protocols 11 (9), 1650-1667, 2016	5188	2016
Kraken: ultrafast metagenomic sequence classification using exact alignments DE Wood, SL Salzberg Genome biology 15, 1-12, 2014	4407	2014
The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... science 309 (5740), 1559-1563, 2005	4110	2005
Identifying bacterial genes and endosymbiont DNA with Glimmer AL Delcher, KA Bratke, EC Powers, SL Salzberg Bioinformatics 23 (6), 673-679, 2007	3219	2007
Improved microbial gene identification with GLIMMER AL Delcher, D Harmon, S Kasif, O White, SL Salzberg Nucleic acids research 27 (23), 4636-4641, 1999	2991	1999
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments BJ Haas, SL Salzberg, W Zhu, M Pertea, JE Allen, J Orvis, O White, ... Genome biology 9, 1-22, 2008	2813	2008

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