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Pierre Khoueiry
Pierre Khoueiry
Verified email at boehringer-ingelheim.com
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Shadow enhancers are pervasive features of developmental regulatory networks
E Cannavò, P Khoueiry, DA Garfield, P Geeleher, T Zichner, ...
Current Biology 26 (1), 38-51, 2016
2572016
Rules governing selective protein carbonylation
E Maisonneuve, A Ducret, P Khoueiry, S Lignon, S Longhi, E Talla, ...
PloS one 4 (10), e7269, 2009
1752009
The ANISEED database: digital representation, formalization, and elucidation of a chordate developmental program
O Tassy, D Dauga, F Daian, D Sobral, F Robin, P Khoueiry, D Salgado, ...
Genome research 20 (10), 1459-1468, 2010
1272010
Ten simple rules for organizing an unconference
A Budd, H Dinkel, M Corpas, JC Fuller, L Rubinat, DP Devos, ...
PLoS computational biology 11 (1), e1003905, 2015
662015
A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites
P Khoueiry, U Rothbächer, Y Ohtsuka, F Daian, E Frangulian, A Roure, ...
Current Biology 20 (9), 792-802, 2010
612010
Uncoupling evolutionary changes in DNA sequence, transcription factor occupancy and enhancer activity
P Khoueiry, C Girardot, L Ciglar, PC Peng, EH Gustafson, S Sinha, ...
Elife 6, e28440, 2017
462017
Discovery of new fusion transcripts in a cohort of pediatric solid cancers at relapse and relevance for personalized medicine
C Dupain, AC Harttrampf, Y Boursin, M Lebeurrier, W Rondof, ...
Molecular Therapy 27 (1), 200-218, 2019
292019
Biggest challenges in bioinformatics
JC Fuller, P Khoueiry, H Dinkel, K Forslund, A Stamatakis, J Barry, A Budd, ...
EMBO reports 14 (4), 302-304, 2013
232013
BRD4 bimodal binding at promoters and drug-induced displacement at Pol II pause sites associates with I-BET sensitivity
P Khoueiry, A Ward Gahlawat, M Petretich, AM Michon, D Simola, E Lam, ...
Epigenetics & Chromatin 12, 1-18, 2019
202019
A pipeline for the systematic identification of non-redundant full-ORF cDNAs for polymorphic and evolutionary divergent genomes: Application to the ascidian Ciona intestinalis
MJ Gilchrist, D Sobral, P Khoueiry, F Daian, B Laporte, I Patrushev, ...
Developmental Biology 404 (2), 149-163, 2015
202015
The Role of Chromatin Accessibility in cis-Regulatory Evolution
PC Peng, P Khoueiry, C Girardot, JP Reddington, DA Garfield, ...
Genome biology and evolution 11 (7), 1813-1828, 2019
172019
The hourglass model of evolutionary conservation during embryogenesis extends to developmental enhancers with signatures of positive selection
J Liu, RR Viales, P Khoueiry, JP Reddington, C Girardot, EEM Furlong, ...
Genome Research 31 (9), 1573-1581, 2021
122021
Similar regulatory logic in Ciona intestinalis for two Wnt pathway modulators, ROR and SFRP-1/5
H Auger, C Lamy, M Haeussler, P Khoueiry, P Lemaire, JS Joly
Developmental biology 329 (2), 364-373, 2009
122009
Prognostic significance of O6-methylguanine-DNA-methyltransferase (MGMT) promoter methylation and isocitrate dehydrogenase-1 (IDH-1) mutation in glioblastoma multiforme …
Z Ayoub, F Geara, M Najjar, Y Comair, N Khoueiry-Zgheib, P Khoueiry, ...
Clinical Neurology and Neurosurgery 182, 92-97, 2019
32019
Uncovering a novel role of focal adhesion and interferon-gamma in cellular rejection of kidney allografts at single cell resolution
A Halawi, AB El Kurdi, KA Vernon, Z Solhjou, JY Choi, AJ Saad, ...
Frontiers in Immunology 14, 1139358, 2023
22023
TempoMAGE: a deep learning framework that exploits the causal dependency between time-series data to predict histone marks in open chromatin regions at time-points with missing …
M Hallal, M Awad, P Khoueiry
Bioinformatics 37 (23), 4336-4342, 2021
22021
fcScan: a versatile tool to cluster combinations of sites using genomic coordinates
A El-Kurdi, GA Khalil, G Khazen, P Khoueiry
BMC bioinformatics 21, 1-8, 2020
22020
Correlation of genetic alterations by whole-exome sequencing with clinical outcomes of glioblastoma patients from the Lebanese population
FS Saadeh, RZ Morsi, A El-Kurdi, G Nemer, R Mahfouz, M Charafeddine, ...
Plos one 15 (11), e0242793, 2020
22020
Deep targeted sequencing analysis of hot spot mutations in non-small cell lung cancer patients from the Middle Eastern population
P Khoueiry, G Fakhri, R Akel, M El Assaad, R Mahfouz, F Khuri, H Chami, ...
Journal of Thoracic Disease 11 (6), 2383, 2019
22019
Phenotypic and transcriptomic impact of expressing mammalian TET2 in the Drosophila melanogaster model
JN Ismail, S Mantash, M Hallal, N Jabado, P Khoueiry, M Shirinian
Epigenetics 18 (1), 2192375, 2023
2023
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