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Rui Qiao
Rui Qiao
Dirección de correo verificada de uwaterloo.ca
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Deep learning enables de novo peptide sequencing from data-independent-acquisition mass spectrometry
NH Tran, R Qiao, L Xin, X Chen, C Liu, X Zhang, B Shan, A Ghodsi, M Li
Nature methods 16 (1), 63-66, 2019
2862019
Computationally instrument-resolution-independent de novo peptide sequencing for high-resolution devices
R Qiao, NH Tran, L Xin, X Chen, M Li, B Shan, A Ghodsi
Nature Machine Intelligence 3 (5), 420-425, 2021
472021
A streamlined platform for analyzing tera-scale DDA and DIA mass spectrometry data enables highly sensitive immunopeptidomics
L Xin, R Qiao, X Chen, H Tran, S Pan, S Rabinoviz, H Bian, X He, B Morse, ...
Nature Communications 13 (1), 3108, 2022
432022
Personalized deep learning of individual immunopeptidomes to identify neoantigens for cancer vaccines
NH Tran, R Qiao, L Xin, X Chen, B Shan, M Li
Nature Machine Intelligence 2 (12), 764-771, 2020
282020
Simple weakly supervised deep learning pipeline for detecting individual red-attacked trees in VHR remote sensing images
R Qiao, A Ghodsi, H Wu, Y Chang, C Wang
Remote Sensing Letters 11 (7), 650-658, 2020
252020
Deepnovov2: Better de novo peptide sequencing with deep learning
R Qiao, NH Tran, L Xin, B Shan, M Li, A Ghodsi
arXiv preprint arXiv:1904.08514, 2019
182019
Personalized workflow to identify optimal T-cell epitopes for peptide-based vaccines against COVID-19
R Qiao, NH Tran, B Shan, A Ghodsi, M Li
arXiv preprint arXiv:2003.10650, 2020
112020
Systems and methods for patient-specific identification of neoantigens by de novo peptide sequencing for personalized immunotherapy
R Qiao, NH Tran, XIN Lei, X Chen, S Baozhen, M Li
US Patent App. 16/775,947, 2020
32020
Peptide sequencing with deep learning
R Qiao
University of Waterloo, 2020
22020
Identifying neoantigens for cancer vaccines by personalized deep learning of individual immunopeptidomes
NH Tran, R Qiao, L Xin, X Chen, B Shan, M Li
Nat. Mach. Intell 2, 764-771, 2019
22019
A complete mass spectrometry-based immunopeptidomics pipeline for neoantigen identification and validation
M Li, NH Tran, C Peng, Q Lei, L Xin, J Lang, Q Zhang, W Li, R Qiao, H Qin, ...
2023
Systems and methods for de novo peptide sequencing from data-independent acquisition using deep learning
S Baozhen, NH Tran, M Li, XIN Lei, R Qiao, X Chen, C Liu
US Patent 11,694,769, 2023
2023
Systems and methods for de novo peptide sequencing using deep learning and spectrum pairs
R Qiao, NH Tran, XIN Lei, X Chen, S Baozhen, A Ghodsi, M Li
US Patent 11,644,470, 2023
2023
Personalized workflow to identify optimal T-cell epitopes for peptide-based vaccines against COVID-19 (preprint)
R Qiao, NH Tran, B Shan, A Ghodsi, M Li
2020
Determining Appropriate Score Thresholds using DeepNovo
R Qiao, L Xin, S Pan, X Wei, X Chen, JR Krieger, B Shan
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