Jordan M Eizenga

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Benedict PatenAssociate Professor; Associate Director, UC Santa Cruz Genomics Institute, University of CaliforniaDirección de correo verificada de ucsc.edu
Erik GarrisonUniversity of Tennessee Health Science CenterDirección de correo verificada de uthsc.edu
Glenn HickeyArenaria Inc.Dirección de correo verificada de arenaria.ca
Jouni SirénUC Santa Cruz Genomics InstituteDirección de correo verificada de ucsc.edu
Miten JainAssistant Research Scientist, UC Santa Cruz Genomics InstituteDirección de correo verificada de ucsc.edu
Jonas Andreas SibbesenCenter for Health Data Science, University of CopenhagenDirección de correo verificada de sund.ku.dk
Richard DurbinDept of Genetics, University of CambridgeDirección de correo verificada de cam.ac.uk
Xian ChangUC Santa Cruz Genomics InstituteDirección de correo verificada de ucsc.edu
David HausslerScientific Director, UC Santa Cruz Genomics Institute, University of California, Santa CruzDirección de correo verificada de soe.ucsc.edu
Andrew CarrollGoogleDirección de correo verificada de google.com
Pi-Chuan ChangGoogleDirección de correo verificada de google.com
Mark AkesonProfessor of Biomolecular Engineering, UC Santa CruzDirección de correo verificada de soe.ucsc.edu
Adam M NovakSenior Software Engineer, UC Santa Cruz Genomics Institute, Computational Genomics LaboratoryDirección de correo verificada de soe.ucsc.edu
Jean MonlongUC Santa Cruz Genomics Institute, University of California, Santa CruzDirección de correo verificada de mail.mcgill.ca

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Jordan M Eizenga

Postdoctoral Researcher, Genomics Institute, University of California Santa Cruz

Dirección de correo verificada de ucsc.edu

Bioinformatics Genomics


Título Ordenar por citas Ordenar por año Ordenar por título	Citado por Citado por	Año
Variation graph toolkit improves read mapping by representing genetic variation in the reference E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ... Nature biotechnology 36 (9), 875-879, 2018	330	2018
Mapping DNA methylation with high-throughput nanopore sequencing AC Rand, M Jain, JM Eizenga, A Musselman-Brown, HE Olsen, M Akeson, ... Nature methods 14 (4), 411-413, 2017	308	2017
Genome graphs and the evolution of genome inference B Paten, AM Novak, JM Eizenga, E Garrison Genome research 27 (5), 665-676, 2017	234	2017
Genotyping structural variants in pangenome graphs using the vg toolkit G Hickey, D Heller, J Monlong, JA Sibbesen, J Sirén, J Eizenga, ... Genome biology 21 (1), 1-17, 2020	97	2020
Pangenome graphs JM Eizenga, AM Novak, JA Sibbesen, S Heumos, A Ghaffaari, G Hickey, ... Annual review of genomics and human genetics 21, 139, 2020	59	2020
Superbubbles, ultrabubbles, and cacti B Paten, JM Eizenga, YM Rosen, AM Novak, E Garrison, G Hickey Journal of Computational Biology 25 (7), 649-663, 2018	54	2018
Genome graphs AM Novak, G Hickey, E Garrison, S Blum, A Connelly, A Dilthey, ... BioRxiv, 101378, 2017	54	2017
Sequence variation aware genome references and read mapping with the variation graph toolkit E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ... BioRxiv, 234856, 2017	33	2017
A phylogenetic approach for haplotype analysis of sequence data from complex mitochondrial mixtures SH Vohr, R Gordon, JM Eizenga, HA Erlich, CD Calloway, RE Green Forensic Science International: Genetics 30, 93-105, 2017	32	2017
Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads K Shafin, T Pesout, PC Chang, M Nattestad, A Kolesnikov, S Goel, G Baid, ... Nature methods 18 (11), 1322-1332, 2021	28	2021
Aerosol microbiome over the Mediterranean Sea diversity and abundance E Mescioglu, E Rahav, N Belkin, P Xian, JM Eizenga, A Vichik, B Herut, ... Atmosphere 10 (8), 440, 2019	22	2019
Pangenomics enables genotyping of known structural variants in 5202 diverse genomes J Sirén, J Monlong, X Chang, AM Novak, JM Eizenga, C Markello, ... Science 374 (6574), abg8871, 2021	20	2021
Haplotype-aware variant calling enables high accuracy in nanopore long-reads using deep neural networks K Shafin, T Pesout, PC Chang, M Nattestad, A Kolesnikov, S Goel, G Baid, ... BioRxiv, 2021	20	2021
Genotyping common, large structural variations in 5,202 genomes using pangenomes, the Giraffe mapper, and the vg toolkit J Sirén, J Monlong, X Chang, AM Novak, JM Eizenga, C Markello, ... Biorxiv, 2020.12. 04.412486, 2021	20	2021
Efficient dynamic variation graphs JM Eizenga, AM Novak, E Kobayashi, F Villani, C Cisar, S Heumos, ... Bioinformatics 36 (21), 5139-5144, 2021	14	2021
Modelling haplotypes with respect to reference cohort variation graphs Y Rosen, J Eizenga, B Paten Bioinformatics 33 (14), i118-i123, 2017	11	2017
A strategy for building and using a human reference pangenome B Llamas, G Narzisi, V Schneider, PA Audano, E Biederstedt, L Blauvelt, ... F1000Research 8, 2019	10	2019
Cytosine variant calling with high-throughput nanopore sequencing AC Rand, M Jain, J Eizenga, A Musselman-Brown, HE Olsen, M Akeson, ... bioRxiv, 047134, 2016	10	2016
Conserved novel ORFs in the mitochondrial genome of the ctenophore Beroe forskalii DT Schultz, JM Eizenga, RB Corbett-Detig, WR Francis, LM Christianson, ... PeerJ 8, e8356, 2020	9	2020
Genome graphs. bioRxiv AM Novak, G Hickey, E Garrison, S Blum, A Connelly, A Dilthey, ... Publisher: Cold Spring Harbor Laboratory Section: New Results). https://www …, 2017	9	2017

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