Jordan M Eizenga

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Benedict PatenAssociate Professor; Associate Director, UC Santa Cruz Genomics Institute, University of CaliforniaDirección de correo verificada de ucsc.edu
Erik GarrisonAssistant Professor, University of Tennessee Health Science CenterDirección de correo verificada de uthsc.edu
Glenn HickeyArenaria Inc.Dirección de correo verificada de arenaria.ca
Jouni SirénUC Santa Cruz Genomics InstituteDirección de correo verificada de ucsc.edu
Miten JainAssistant Professor, Northeastern UniversityDirección de correo verificada de northeastern.edu
Xian ChangUC Santa Cruz Genomics InstituteDirección de correo verificada de ucsc.edu
Jean MonlongUC Santa Cruz Genomics Institute, University of California, Santa CruzDirección de correo verificada de mail.mcgill.ca
Andrew CarrollGoogleDirección de correo verificada de google.com
Pi-Chuan ChangGoogleDirección de correo verificada de google.com
Richard DurbinDept of Genetics, University of CambridgeDirección de correo verificada de cam.ac.uk
David HausslerScientific Director, UC Santa Cruz Genomics Institute, University of California, Santa CruzDirección de correo verificada de soe.ucsc.edu
Mark AkesonProfessor of Biomolecular Engineering, UC Santa CruzDirección de correo verificada de soe.ucsc.edu
Adam M NovakSenior Software Engineer, UC Santa Cruz Genomics Institute, Computational Genomics LaboratoryDirección de correo verificada de soe.ucsc.edu
Yohei RosenNYU School of Medicine/UC Santa Cruz Genomics InstituteDirección de correo verificada de ucsc.edu
Kishwar ShafinResearch Scientist, GoogleDirección de correo verificada de google.com
Trevor PesoutUC Santa Cruz Genomics InstituteDirección de correo verificada de ucsc.edu
Ryan Lorig-RoachDirección de correo verificada de ucsc.edu
Santiago Marco-SolaBarcelona Supercomputing Center (BSC)Dirección de correo verificada de bsc.es
Jonas Andreas Sibbesen

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Jordan M Eizenga

Postdoctoral Researcher, Genomics Institute, University of California Santa Cruz

Dirección de correo verificada de ucsc.edu

Bioinformatics Genomics


Título Ordenar por citas Ordenar por año Ordenar por título	Citado por Citado por	Año
Variation graph toolkit improves read mapping by representing genetic variation in the reference E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ... Nature biotechnology 36 (9), 875-879, 2018	476	2018
Mapping DNA methylation with high-throughput nanopore sequencing AC Rand, M Jain, JM Eizenga, A Musselman-Brown, HE Olsen, M Akeson, ... Nature methods 14 (4), 411-413, 2017	411	2017
Genome graphs and the evolution of genome inference B Paten, AM Novak, JM Eizenga, E Garrison Genome research 27 (5), 665-676, 2017	295	2017
Genotyping structural variants in pangenome graphs using the vg toolkit G Hickey, D Heller, J Monlong, JA Sibbesen, J Sirén, J Eizenga, ... Genome biology 21, 1-17, 2020	159	2020
A draft human pangenome reference WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ... Nature 617 (7960), 312-324, 2023	153	2023
Pangenome graphs JM Eizenga, AM Novak, JA Sibbesen, S Heumos, A Ghaffaari, G Hickey, ... Annual review of genomics and human genetics 21, 139-162, 2020	150	2020
Pangenomics enables genotyping of known structural variants in 5202 diverse genomes J Sirén, J Monlong, X Chang, AM Novak, JM Eizenga, C Markello, ... Science 374 (6574), abg8871, 2021	118	2021
Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads K Shafin, T Pesout, PC Chang, M Nattestad, A Kolesnikov, S Goel, G Baid, ... Nature methods 18 (11), 1322-1332, 2021	116	2021
Superbubbles, ultrabubbles, and cacti B Paten, JM Eizenga, YM Rosen, AM Novak, E Garrison, G Hickey Journal of Computational Biology 25 (7), 649-663, 2018	64	2018
Genome graphs AM Novak, G Hickey, E Garrison, S Blum, A Connelly, A Dilthey, ... BioRxiv, 101378, 2017	54	2017
A phylogenetic approach for haplotype analysis of sequence data from complex mitochondrial mixtures SH Vohr, R Gordon, JM Eizenga, HA Erlich, CD Calloway, RE Green Forensic Science International: Genetics 30, 93-105, 2017	44	2017
Haplotype-aware variant calling enables high accuracy in nanopore long-reads using deep neural networks K Shafin, T Pesout, PC Chang, M Nattestad, A Kolesnikov, S Goel, G Baid, ... BioRxiv, 2021.03. 04.433952, 2021	30	2021
Efficient dynamic variation graphs JM Eizenga, AM Novak, E Kobayashi, F Villani, C Cisar, S Heumos, ... Bioinformatics 36 (21), 5139-5144, 2020	30	2020
Sequence variation aware genome references and read mapping with the variation graph toolkit E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ... BioRxiv, 234856, 2017	29	2017
Aerosol microbiome over the Mediterranean Sea diversity and abundance E Mescioglu, E Rahav, N Belkin, P Xian, JM Eizenga, A Vichik, B Herut, ... Atmosphere 10 (8), 440, 2019	26	2019
Genotyping common, large structural variations in 5,202 genomes using pangenomes, the Giraffe mapper, and the vg toolkit J Sirén, J Monlong, X Chang, AM Novak, JM Eizenga, C Markello, ... BioRxiv, 2020.12. 04.412486, 2020	24	2020
Pangenome graph construction from genome alignments with Minigraph-Cactus G Hickey, J Monlong, J Ebler, AM Novak, JM Eizenga, Y Gao, T Marschall, ... Nature Biotechnology, 1-11, 2023	22	2023
Haplotype-aware pantranscriptome analyses using spliced pangenome graphs JA Sibbesen, JM Eizenga, AM Novak, J Sirén, X Chang, E Garrison, ... Nature Methods 20 (2), 239-247, 2023	22	2023
Optimal gap-affine alignment in O(s) space S Marco-Sola, JM Eizenga, A Guarracino, B Paten, E Garrison, M Moreto Bioinformatics 39 (2), btad074, 2023	17	2023
Gaps and complex structurally variant loci in phased genome assemblies D Porubsky, MR Vollger, WT Harvey, AN Rozanski, P Ebert, G Hickey, ... Genome Research 33 (4), 496-510, 2023	14	2023

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