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Jiye Shi
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FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties
J Shi, TL Blundell, K Mizuguchi
Journal of molecular biology 310 (1), 243-257, 2001
14782001
Hybridization chain reaction amplification of microRNA detection with a tetrahedral DNA nanostructure-based electrochemical biosensor
Z Ge, M Lin, P Wang, H Pei, J Yan, J Shi, Q Huang, D He, C Fan, X Zuo
Analytical chemistry 86 (4), 2124-2130, 2014
4932014
Single‐particle tracking and modulation of cell entry pathways of a tetrahedral DNA nanostructure in live cells
L Liang, J Li, Q Li, Q Huang, J Shi, H Yan, C Fan
Angewandte Chemie International Edition 53 (30), 7745-7750, 2014
4762014
SAbDab: the structural antibody database
J Dunbar, K Krawczyk, J Leem, T Baker, A Fuchs, G Georges, J Shi, ...
Nucleic acids research 42 (D1), D1140-D1146, 2014
4532014
Smart drug delivery nanocarriers with self‐assembled DNA nanostructures
J Li, C Fan, H Pei, J Shi, Q Huang
Advanced materials 25 (32), 4386-4396, 2013
4362013
Programmable engineering of a biosensing interface with tetrahedral DNA nanostructures for ultrasensitive DNA detection
M Lin, J Wang, G Zhou, J Wang, N Wu, J Lu, J Gao, X Chen, J Shi, X Zuo, ...
Angewandte Chemie International Edition 54 (7), 2151-2155, 2015
3902015
An exonuclease III‐powered, on‐particle stochastic DNA walker
X Qu, D Zhu, G Yao, S Su, J Chao, H Liu, X Zuo, L Wang, J Shi, L Wang, ...
Angewandte Chemie 129 (7), 1881-1884, 2017
3532017
Electrochemical detection of nucleic acids, proteins, small molecules and cells using a DNA-nanostructure-based universal biosensing platform
M Lin, P Song, G Zhou, X Zuo, A Aldalbahi, X Lou, J Shi, C Fan
nature protocols 11 (7), 1244-1263, 2016
3162016
DNA origami nanostructures can exhibit preferential renal uptake and alleviate acute kidney injury
D Jiang, Z Ge, HJ Im, CG England, D Ni, J Hou, L Zhang, CJ Kutyreff, ...
Nature biomedical engineering 2 (11), 865-877, 2018
3092018
Advances in the study of berberine and its derivatives: a focus on anti-inflammatory and anti-tumor effects in the digestive system
K Zou, Z Li, Y Zhang, H Zhang, B Li, W Zhu, J Shi, Q Jia, Y Li
Acta Pharmacologica Sinica 38 (2), 157-167, 2017
2802017
Five computational developability guidelines for therapeutic antibody profiling
MIJ Raybould, C Marks, K Krawczyk, B Taddese, J Nowak, AP Lewis, ...
Proceedings of the National Academy of Sciences 116 (10), 4025-4030, 2019
2632019
Real-time visualization of clustering and intracellular transport of gold nanoparticles by correlative imaging
M Liu, Q Li, L Liang, J Li, K Wang, J Li, M Lv, N Chen, H Song, J Lee, J Shi, ...
Nature communications 8 (1), 15646, 2017
2512017
Graphene oxide‐based antibacterial cotton fabrics
J Zhao, B Deng, M Lv, J Li, Y Zhang, H Jiang, C Peng, J Li, J Shi, ...
Advanced Healthcare Materials 2 (9), 1259-1266, 2013
2512013
A multi-crystal method for extracting obscured crystallographic states from conventionally uninterpretable electron density
NM Pearce, T Krojer, AR Bradley, P Collins, RP Nowak, R Talon, ...
Nature communications 8 (1), 15123, 2017
2322017
Multicolor gold–silver nano-mushrooms as ready-to-use SERS probes for ultrasensitive and multiplex DNA/miRNA detection
J Su, D Wang, L Nörbel, J Shen, Z Zhao, Y Dou, T Peng, J Shi, S Mathur, ...
Analytical chemistry 89 (4), 2531-2538, 2017
2212017
DNA hydrogel with aptamer-toehold-based recognition, cloaking, and decloaking of circulating tumor cells for live cell analysis
P Song, D Ye, X Zuo, J Li, J Wang, H Liu, MT Hwang, J Chao, S Su, ...
Nano letters 17 (9), 5193-5198, 2017
2132017
ABodyBuilder: Automated antibody structure prediction with data–driven accuracy estimation
J Leem, J Dunbar, G Georges, J Shi, CM Deane
MAbs 8 (7), 1259-1268, 2016
2032016
Solving mazes with single-molecule DNA navigators
J Chao, J Wang, F Wang, X Ouyang, E Kopperger, H Liu, Q Li, J Shi, ...
Nature materials 18 (3), 273-279, 2019
1992019
Nanoscale optical probes for cellular imaging
H Xu, Q Li, L Wang, Y He, J Shi, B Tang, C Fan
Chemical Society Reviews 43 (8), 2650-2661, 2014
1972014
The prospects of quantum computing in computational molecular biology
C Outeiral, M Strahm, J Shi, GM Morris, SC Benjamin, CM Deane
Wiley Interdisciplinary Reviews: Computational Molecular Science 11 (1), e1481, 2021
1932021
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