Molecular identity of human outer radial glia during cortical development AA Pollen, TJ Nowakowski, J Chen, H Retallack, C Sandoval-Espinosa, ... Cell 163 (1), 55-67, 2015 | 795 | 2015 |
Single-cell profiling of human gliomas reveals macrophage ontogeny as a basis for regional differences in macrophage activation in the tumor microenvironment S Müller, G Kohanbash, SJ Liu, B Alvarado, D Carrera, A Bhaduri, ... Genome biology 18, 1-14, 2017 | 546 | 2017 |
Single-cell analysis of long non-coding RNAs in the developing human neocortex SJ Liu, TJ Nowakowski, AA Pollen, JH Lui, MA Horlbeck, FJ Attenello, ... Genome biology 17, 1-17, 2016 | 364 | 2016 |
Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo AD Ramos, A Diaz, A Nellore, RN Delgado, KY Park, G Gonzales-Roybal, ... Cell stem cell 12 (5), 616-628, 2013 | 267 | 2013 |
Outer radial glia-like cancer stem cells contribute to heterogeneity of glioblastoma A Bhaduri, E Di Lullo, D Jung, S Müller, EE Crouch, CS Espinosa, ... Cell stem cell 26 (1), 48-63. e6, 2020 | 265 | 2020 |
The phenotypes of proliferating glioblastoma cells reside on a single axis of variation L Wang, H Babikir, S Müller, G Yagnik, K Shamardani, F Catalan, ... Cancer discovery 9 (12), 1708-1719, 2019 | 237 | 2019 |
The immune suppressive microenvironment of human gliomas depends on the accumulation of bone marrow-derived macrophages in the center of the lesion L Pinton, E Masetto, M Vettore, S Solito, S Magri, M D’andolfi, ... Journal for immunotherapy of cancer 7, 1-14, 2019 | 130 | 2019 |
Normalization, bias correction, and peak calling for ChIP-seq A Diaz, K Park, DA Lim, JS Song Statistical Applications in Genetics and Molecular Biology 11 (3), 2012 | 128 | 2012 |
Polycomb-like 3 promotes Polycomb repressive complex 2 binding to CpG islands and embryonic stem cell self-renewal J Hunkapiller, Y Shen, A Diaz, G Cagney, D McCleary, ... PLoS Genetics 8 (3), e1002576, 2012 | 115 | 2012 |
Single‐cell sequencing maps gene expression to mutational phylogenies in PDGF‐and EGF‐driven gliomas S Müller, SJ Liu, E Di Lullo, M Malatesta, AA Pollen, TJ Nowakowski, ... Molecular systems biology 12 (11), 889, 2016 | 106 | 2016 |
Systematic identification of barriers to human iPSC generation H Qin, A Diaz, L Blouin, RJ Lebbink, W Patena, P Tanbun, EM LeProust, ... Cell 158 (2), 449-461, 2014 | 106 | 2014 |
CONICS integrates scRNA-seq with DNA sequencing to map gene expression to tumor sub-clones S Müller, A Cho, SJ Liu, DA Lim, A Diaz Bioinformatics 34 (18), 3217, 2018 | 95 | 2018 |
CHANCE: comprehensive software for quality control and validation of ChIP-seq data A Diaz, A Nellore, JS Song Genome biology 13, 1-15, 2012 | 82 | 2012 |
The transcriptionally permissive chromatin state of embryonic stem cells is acutely tuned to translational output A Bulut-Karslioglu, TA Macrae, JA Oses-Prieto, S Covarrubias, ... Cell stem cell 22 (3), 369-383. e8, 2018 | 80 | 2018 |
Discovering dominant tumor immune archetypes in a pan-cancer census AJ Combes, B Samad, J Tsui, NW Chew, P Yan, GC Reeder, D Kushnoor, ... Cell 185 (1), 184-203. e19, 2022 | 76 | 2022 |
HiTSelect: a comprehensive tool for high-complexity-pooled screen analysis AA Diaz, H Qin, M Ramalho-Santos, JS Song Nucleic acids research 43 (3), e16-e16, 2015 | 75 | 2015 |
A single-cell atlas of glioblastoma evolution under therapy reveals cell-intrinsic and cell-extrinsic therapeutic targets L Wang, J Jung, H Babikir, K Shamardani, S Jain, X Feng, N Gupta, ... Nature cancer 3 (12), 1534-1552, 2022 | 73 | 2022 |
Thermoregulation via temperature-dependent PGD2 production in mouse preoptic area TA Wang, CF Teo, M Åkerblom, C Chen, M Tynan-La Fontaine, ... Neuron 103 (2), 309-322. e7, 2019 | 64 | 2019 |
Unique challenges for glioblastoma immunotherapy—discussions across neuro-oncology and non-neuro-oncology experts in cancer immunology. Meeting Report from the 2019 SNO Immuno … P Chuntova, F Chow, PB Watchmaker, M Galvez, AB Heimberger, ... Neuro-oncology 23 (3), 356-375, 2021 | 63 | 2021 |
The landscape of tumor cell states and spatial organization in H3-K27M mutant diffuse midline glioma across age and location I Liu, L Jiang, ER Samuelsson, S Marco Salas, A Beck, OA Hack, D Jeong, ... Nature Genetics 54 (12), 1881-1894, 2022 | 58 | 2022 |