David Holmes
David Holmes
Director, Center for Bioinformatics and Genome Biology
Verified email at cienciavida.org - Homepage
Title
Cited by
Cited by
Year
A rapid boiling method for the preparation of bacterial plasmids
DS Holmes, M Quigley
Analytical biochemistry 114 (1), 193-197, 1981
36131981
Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications
J Valdés, I Pedroso, R Quatrini, RJ Dodson, H Tettelin, R Blake, JA Eisen, ...
BMC genomics 9 (1), 597, 2008
4462008
Preparation, molecular weight, base composition, and secondary structure of giant nuclear ribonucleic acid
DS Holmes, J Bonner
Biochemistry 12 (12), 2330-2338, 1973
3511973
Extending the models for iron and sulfur oxidation in the extreme Acidophile Acidithiobacillus ferrooxidans
R Quatrini, C Appia-Ayme, Y Denis, E Jedlicki, DS Holmes, V Bonnefoy
BMC genomics 10 (1), 394, 2009
2852009
Genomic insights into microbial iron oxidation and iron uptake strategies in extremely acidic environments
V Bonnefoy, DS Holmes
Environmental Microbiology 14 (7), 1597-1611, 2012
1712012
Biological cyanide destruction mediated by microorganisms
SK Dubey, DS Holmes
World Journal of Microbiology and Biotechnology 11 (3), 257-265, 1995
1571995
Use of Fe(III) as an Electron Acceptor To Recover Previously Uncultured Hyperthermophiles: Isolation and Characterization of Geothermobacterium ferrireducens gen. nov., sp. nov.
ALR K Kashefi, DE Holmes
Appl. Environ. Microbiol. 68, 1735-1742, 2002
1422002
Insights into the iron and sulfur energetic metabolism of Acidithiobacillus ferrooxidans by microarray transcriptome profiling
R Quatrini, C Appia-Ayme, Y Denis, J Ratouchniak, F Veloso, J Valdes, ...
Hydrometallurgy 83 (1-4), 263-272, 2006
1392006
Sulfur metabolism in the extreme acidophile Acidithiobacillus caldus
S Mangold, J Valdés, D Holmes, M Dopson
Frontiers in microbiology 2, 17, 2011
1202011
Anaerobic sulfur metabolism coupled to dissimilatory iron reduction in the extremophile Acidithiobacillus ferrooxidans
S Mangold, Y Denis, M Esparza, DB Johnson, V Bonnefoy, M Dopson, ...
Applied and environmental microbiology 79 (7), 2172-2181, 2013
1182013
Selection of reference genes for quantitative real-time RT-PCR analysis in citrus
J Yan, F Yuan, G Long, L Qin, Z Deng
Molecular biology reports 39 (2), 1831-1838, 2012
1112012
Identification of a gene cluster for the formation of extracellular polysaccharide precursors in the chemolithoautotroph Acidithiobacillus ferrooxidans
M Barreto, E Jedlicki, DS Holmes
Applied and environmental microbiology 71 (6), 2902-2909, 2005
1072005
Apparent redundancy of electron transfer pathways via bc1 complexes and terminal oxidases in the extremophilic chemolithoautotrophic Acidithiobacillus ferrooxidans
G Brasseur, G Levicán, V Bonnefoy, D Holmes, E Jedlicki, ...
Biochimica et Biophysica Acta (BBA)-Bioenergetics 1656 (2-3), 114-126, 2004
962004
Proteins involved in electron transfer to Fe (III) and Mn (IV) oxides by Geobacter sulfurreducens and Geobacter uraniireducens
DEH M Aklujkar, MV Coppi, C Leang, BC Kim, MA Chavan, LA Perpetua, L ...
Microbiology 159, 515-535, 2013
952013
Comparative genome analysis of Acidithiobacillus ferrooxidans, A. thiooxidans and A. caldus: insights into their metabolism and ecophysiology
J Valdés, I Pedroso, R Quatrini, DS Holmes
Hydrometallurgy 94 (1-4), 180-184, 2008
812008
Bioinformatic prediction and experimental verification of Fur-regulated genes in the extreme acidophile Acidithiobacillus ferrooxidans
R Quatrini, C Lefimil, FA Veloso, I Pedroso, DS Holmes, E Jedlicki
Nucleic acids research 35 (7), 2153-2166, 2007
812007
Differential expression of two bc1 complexes in the strict acidophilic chemolithoautotrophic bacterium Acidithiobacillus ferrooxidans suggests a model for their respective …
P Bruscella, C Appia-Ayme, G Levican, J Ratouchniak, E Jedlicki, ...
Microbiology 153 (1), 102-110, 2007
812007
Two families of repeated DNA sequences in Thiobacillus ferrooxidans.
JR Yates, DS Holmes
Journal of bacteriology 169 (5), 1861-1870, 1987
811987
Second acyl homoserine lactone production system in the extreme acidophile Acidithiobacillus ferrooxidans
M Rivas, M Seeger, E Jedlicki, DS Holmes
Applied and environmental microbiology 73 (10), 3225-3231, 2007
782007
Acidiphilium organovorum sp. nov., an acidophilic heterotroph isolated from a Thiobacillus ferrooxidans culture
JH Lobos, TE Chisolm, LH Bopp, DS Holmes
International Journal of Systematic and Evolutionary Microbiology 36 (2 …, 1986
771986
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