David Holmes
David Holmes
Director, Center for Bioinformatics and Genome Biology
Verified email at cienciavida.org - Homepage
TitleCited byYear
A rapid boiling method for the preparation of bacterial plasmids
DS Holmes, M Quigley
Analytical biochemistry 114 (1), 193-197, 1981
35551981
Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications
J Valdés, I Pedroso, R Quatrini, RJ Dodson, H Tettelin, R Blake, JA Eisen, ...
BMC genomics 9 (1), 597, 2008
3822008
Preparation, molecular weight, base composition, and secondary structure of giant nuclear ribonucleic acid
DS Holmes, J Bonner
Biochemistry 12 (12), 2330-2338, 1973
3471973
Extending the models for iron and sulfur oxidation in the extreme acidophile Acidithiobacillus ferrooxidans
R Quatrini, C Appia-Ayme, Y Denis, E Jedlicki, DS Holmes, V Bonnefoy
BMC genomics 10 (1), 394, 2009
2612009
Genomic insights into microbial iron oxidation and iron uptake strategies in extremely acidic environments
V Bonnefoy, DS Holmes
Environmental Microbiology 14 (7), 1597-1611, 2012
1572012
Biological cyanide destruction mediated by microorganisms
SK Dubey, DS Holmes
World Journal of Microbiology and Biotechnology 11 (3), 257-265, 1995
1511995
Use of Fe(III) as an Electron Acceptor To Recover Previously Uncultured Hyperthermophiles: Isolation and Characterization of Geothermobacterium ferrireducens gen. nov., sp. nov.
ALR K Kashefi, DE Holmes
Appl. Environ. Microbiol. 68, 1735-1742, 2002
1372002
Insights into the iron and sulfur energetic metabolism of Acidithiobacillus ferrooxidans by microarray transcriptome profiling
R Quatrini, C Appia-Ayme, Y Denis, J Ratouchniak, F Veloso, J Valdes, ...
Hydrometallurgy 83 (1-4), 263-272, 2006
1312006
Sulfur metabolism in the extreme acidophile Acidithiobacillus caldus
S Mangold, J Valdés, D Holmes, M Dopson
Frontiers in microbiology 2, 17, 2011
1092011
Anaerobic sulfur metabolism coupled to dissimilatory iron reduction in the extremophile Acidithiobacillus ferrooxidans
S Mangold, Y Denis, M Esparza, DB Johnson, V Bonnefoy, M Dopson, ...
Appl. Environ. Microbiol. 79 (7), 2172-2181, 2013
1082013
Apparent redundancy of electron transfer pathways via bc1 complexes and terminal oxidases in the extremophilic chemolithoautotrophic Acidithiobacillus ferrooxidans
G Brasseur, G Levicán, V Bonnefoy, D Holmes, E Jedlicki, ...
Biochimica et Biophysica Acta (BBA)-Bioenergetics 1656 (2-3), 114-126, 2004
1012004
Selection of reference genes for quantitative real-time RT-PCR analysis in citrus
J Yan, F Yuan, G Long, L Qin, Z Deng
Molecular biology reports 39 (2), 1831-1838, 2012
992012
Identification of a gene cluster for the formation of extracellular polysaccharide precursors in the chemolithoautotroph Acidithiobacillus ferrooxidans
M Barreto, E Jedlicki, DS Holmes
Appl. Environ. Microbiol. 71 (6), 2902-2909, 2005
982005
Proteins involved in electron transfer to Fe (III) and Mn (IV) oxides by Geobacter sulfurreducens and Geobacter uraniireducens
DEH M Aklujkar, MV Coppi, C Leang, BC Kim, MA Chavan, LA Perpetua, L ...
Microbiology 159, 515-535, 2013
902013
Two families of repeated DNA sequences in Thiobacillus ferrooxidans.
JR Yates, DS Holmes
Journal of bacteriology 169 (5), 1861-1870, 1987
781987
Comparative genome analysis of Acidithiobacillus ferrooxidans, A. thiooxidans and A. caldus: insights into their metabolism and ecophysiology
J Valdés, I Pedroso, R Quatrini, DS Holmes
Hydrometallurgy 94 (1-4), 180-184, 2008
772008
Sequence composition of rat nuclear deoxyribonucleic acid and high molecular weight nuclear ribonucleic acid
DS Holmes, J Bonner
Biochemistry 13 (5), 841-848, 1974
771974
Draft genome of the psychrotolerant acidophile Acidithiobacillus ferrivorans SS3
M Liljeqvist, J Valdes, DS Holmes, M Dopson
Journal of bacteriology 193 (16), 4304-4305, 2011
742011
Differential expression of two bc1 complexes in the strict acidophilic chemolithoautotrophic bacterium Acidithiobacillus ferrooxidans suggests a model for their respective …
P Bruscella, C Appia-Ayme, G Levican, J Ratouchniak, E Jedlicki, ...
Microbiology 153 (1), 102-110, 2007
742007
Metabolic reconstruction of sulfur assimilation in the extremophile Acidithiobacillus ferrooxidans based on genome analysis
J Valdés, F Veloso, E Jedlicki, D Holmes
BMC genomics 4 (1), 51, 2003
742003
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