David Holmes
David Holmes
Director, Center for Bioinformatics and Genome Biology
Verified email at cienciavida.org - Homepage
TitleCited byYear
A rapid boiling method for the preparation of bacterial plasmids
DS Holmes, M Quigley
Analytical biochemistry 114 (1), 193-197, 1981
35131981
Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications
J Valdés, I Pedroso, R Quatrini, RJ Dodson, H Tettelin, R Blake, JA Eisen, ...
BMC genomics 9 (1), 597, 2008
3602008
Preparation, molecular weight, base composition, and secondary structure of giant nuclear ribonucleic acid
DS Holmes, J Bonner
Biochemistry 12 (12), 2330-2338, 1973
3441973
Extending the models for iron and sulfur oxidation in the extreme acidophile Acidithiobacillus ferrooxidans
R Quatrini, C Appia-Ayme, Y Denis, E Jedlicki, DS Holmes, V Bonnefoy
BMC genomics 10 (1), 394, 2009
2442009
Genomic insights into microbial iron oxidation and iron uptake strategies in extremely acidic environments
V Bonnefoy, DS Holmes
Environmental Microbiology 14 (7), 1597-1611, 2012
1462012
Biological cyanide destruction mediated by microorganisms
SK Dubey, DS Holmes
World Journal of Microbiology and Biotechnology 11 (3), 257-265, 1995
1411995
Use of Fe(III) as an Electron Acceptor To Recover Previously Uncultured Hyperthermophiles: Isolation and Characterization of Geothermobacterium ferrireducens gen. nov., sp. nov.
ALR K Kashefi, DE Holmes
Appl. Environ. Microbiol. 68, 1735-1742, 2002
1342002
Insights into the iron and sulfur energetic metabolism of Acidithiobacillus ferrooxidans by microarray transcriptome profiling
R Quatrini, C Appia-Ayme, Y Denis, J Ratouchniak, F Veloso, J Valdes, ...
Hydrometallurgy 83 (1-4), 263-272, 2006
1252006
Sulfur metabolism in the extreme acidophile Acidithiobacillus caldus
S Mangold, J Valdés, D Holmes, M Dopson
Frontiers in microbiology 2, 17, 2011
1052011
Selection of reference genes for quantitative real-time RT-PCR analysis in citrus
J Yan, F Yuan, G Long, L Qin, Z Deng
Molecular biology reports 39 (2), 1831-1838, 2012
972012
Anaerobic sulfur metabolism coupled to dissimilatory iron reduction in the extremophile Acidithiobacillus ferrooxidans
S Mangold, Y Denis, M Esparza, DB Johnson, V Bonnefoy, M Dopson, ...
Appl. Environ. Microbiol. 79 (7), 2172-2181, 2013
952013
Identification of a gene cluster for the formation of extracellular polysaccharide precursors in the chemolithoautotroph Acidithiobacillus ferrooxidans
M Barreto, E Jedlicki, DS Holmes
Appl. Environ. Microbiol. 71 (6), 2902-2909, 2005
942005
Apparent redundancy of electron transfer pathways via bc1 complexes and terminal oxidases in the extremophilic chemolithoautotrophic Acidithiobacillus ferrooxidans
G Brasseur, G Levicán, V Bonnefoy, D Holmes, E Jedlicki, ...
Biochimica et Biophysica Acta (BBA)-Bioenergetics 1656 (2-3), 114-126, 2004
942004
Proteins involved in electron transfer to Fe (III) and Mn (IV) oxides by Geobacter sulfurreducens and Geobacter uraniireducens
DEH M Aklujkar, MV Coppi, C Leang, BC Kim, MA Chavan, LA Perpetua, L ...
Microbiology 159, 515-535, 2013
822013
Sequence composition of rat nuclear deoxyribonucleic acid and high molecular weight nuclear ribonucleic acid
DS Holmes, J Bonner
Biochemistry 13 (5), 841-848, 1974
771974
Two families of repeated DNA sequences in Thiobacillus ferrooxidans.
JR Yates, DS Holmes
Journal of bacteriology 169 (5), 1861-1870, 1987
761987
Functional organization of the mammalian genome
J Bonner, WT Garrard, J Gottesfeld, DS Holmes, JS Sevall, M Wilkes
Cold Spring Harbor symposia on quantitative biology 38, 303-310, 1974
751974
Comparative genome analysis of Acidithiobacillus ferrooxidans, A. thiooxidans and A. caldus: insights into their metabolism and ecophysiology
J Valdés, I Pedroso, R Quatrini, DS Holmes
Hydrometallurgy 94 (1-4), 180-184, 2008
742008
Acidiphilium organovorum sp. nov., an acidophilic heterotroph isolated from a Thiobacillus ferrooxidans culture
JH Lobos, TE Chisolm, LH Bopp, DS Holmes
International Journal of Systematic and Evolutionary Microbiology 36 (2 …, 1986
741986
Draft genome of the psychrotolerant acidophile Acidithiobacillus ferrivorans SS3
M Liljeqvist, J Valdes, DS Holmes, M Dopson
Journal of bacteriology 193 (16), 4304-4305, 2011
702011
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