David Holmes
David Holmes
Director, Center for Bioinformatics and Genome Biology
Verified email at cienciavida.org - Homepage
Title
Cited by
Cited by
Year
A rapid boiling method for the preparation of bacterial plasmids
DS Holmes, M Quigley
Analytical biochemistry 114 (1), 193-197, 1981
38701981
Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications
J Valdés, I Pedroso, R Quatrini, RJ Dodson, H Tettelin, R Blake, JA Eisen, ...
BMC genomics 9 (1), 1-24, 2008
4612008
Preparation, molecular weight, base composition, and secondary structure of giant nuclear ribonucleic acid
DS Holmes, J Bonner
Biochemistry 12 (12), 2330-2338, 1973
3711973
Extending the models for iron and sulfur oxidation in the extreme acidophile Acidithiobacillus ferrooxidans
R Quatrini, C Appia-Ayme, Y Denis, E Jedlicki, DS Holmes, V Bonnefoy
BMC genomics 10 (1), 1-19, 2009
3012009
Genomic insights into microbial iron oxidation and iron uptake strategies in extremely acidic environments
V Bonnefoy, DS Holmes
Environmental Microbiology 14 (7), 1597-1611, 2012
1832012
Biological cyanide destruction mediated by microorganisms
SK Dubey, DS Holmes
World Journal of Microbiology and Biotechnology 11 (3), 257-265, 1995
1631995
Use of Fe(III) as an Electron Acceptor To Recover Previously Uncultured Hyperthermophiles: Isolation and Characterization of Geothermobacterium ferrireducens gen. nov., sp. nov.
ALR K Kashefi, DE Holmes
Appl. Environ. Microbiol. 68, 1735-1742, 2002
1462002
Insights into the iron and sulfur energetic metabolism of Acidithiobacillus ferrooxidans by microarray transcriptome profiling
R Quatrini, C Appia-Ayme, Y Denis, J Ratouchniak, F Veloso, J Valdes, ...
Hydrometallurgy 83 (1-4), 263-272, 2006
1422006
Sulfur metabolism in the extreme acidophile Acidithiobacillus caldus
S Mangold, J Valdés, D Holmes, M Dopson
Frontiers in microbiology 2, 17, 2011
1312011
Anaerobic sulfur metabolism coupled to dissimilatory iron reduction in the extremophile Acidithiobacillus ferrooxidans
S Mangold, Y Denis, M Esparza, DB Johnson, V Bonnefoy, M Dopson, ...
Applied and environmental microbiology 79 (7), 2172-2181, 2013
1282013
Selection of reference genes for quantitative real-time RT-PCR analysis in citrus
J Yan, F Yuan, G Long, L Qin, Z Deng
Molecular biology reports 39 (2), 1831-1838, 2012
1112012
Identification of a gene cluster for the formation of extracellular polysaccharide precursors in the chemolithoautotroph Acidithiobacillus ferrooxidans
M Barreto, E Jedlicki, DS Holmes
Applied and environmental microbiology 71 (6), 2902-2909, 2005
1102005
Proteins involved in electron transfer to Fe (III) and Mn (IV) oxides by Geobacter sulfurreducens and Geobacter uraniireducens
DEH M Aklujkar, MV Coppi, C Leang, BC Kim, MA Chavan, LA Perpetua, L ...
Microbiology 159, 515-535, 2013
1042013
Apparent redundancy of electron transfer pathways via bc1 complexes and terminal oxidases in the extremophilic chemolithoautotrophic Acidithiobacillus ferrooxidans
G Brasseur, G Levicán, V Bonnefoy, D Holmes, E Jedlicki, ...
Biochimica et Biophysica Acta (BBA)-Bioenergetics 1656 (2-3), 114-126, 2004
1022004
Two families of repeated DNA sequences in Thiobacillus ferrooxidans.
JR Yates, DS Holmes
Journal of bacteriology 169 (5), 1861-1870, 1987
871987
Differential expression of two bc1 complexes in the strict acidophilic chemolithoautotrophic bacterium Acidithiobacillus ferrooxidans suggests a model for their respective …
P Bruscella, C Appia-Ayme, G Levican, J Ratouchniak, E Jedlicki, ...
Microbiology 153 (1), 102-110, 2007
862007
Comparative genome analysis of Acidithiobacillus ferrooxidans, A. thiooxidans and A. caldus: insights into their metabolism and ecophysiology
J Valdés, I Pedroso, R Quatrini, DS Holmes
Hydrometallurgy 94 (1-4), 180-184, 2008
842008
Metal resistance in acidophilic microorganisms and its significance for biotechnologies
M Dopson, DS Holmes
Applied microbiology and biotechnology 98 (19), 8133-8144, 2014
822014
Acidiphilium organovorum sp. nov., an acidophilic heterotroph isolated from a Thiobacillus ferrooxidans culture
JH Lobos, TE Chisolm, LH Bopp, DS Holmes
International Journal of Systematic and Evolutionary Microbiology 36 (2 …, 1986
821986
Second acyl homoserine lactone production system in the extreme acidophile Acidithiobacillus ferrooxidans
M Rivas, M Seeger, E Jedlicki, DS Holmes
Applied and environmental microbiology 73 (10), 3225-3231, 2007
802007
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