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RL Warren
RL Warren
Genome Sciences Centre, BC Cancer
Verified email at bcgsc.ca - Homepage
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Cited by
Year
Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma
M Castellarin, RL Warren, JD Freeman, L Dreolini, M Krzywinski, ...
Genome research 22 (2), 299-306, 2012
19072012
Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution
SP Shah, RD Morin, J Khattra, L Prentice, T Pugh, A Burleigh, A Delaney, ...
Nature 461 (7265), 809-813, 2009
12902009
The cardiac transcription factors Nkx2-5 and GATA-4 are mutual cofactors
D Durocher, F Charron, R Warren, RJ Schwartz, M Nemer
The EMBO journal 16 (18), 5687-5696, 1997
8101997
The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse
MP McLeod, RL Warren, WWL Hsiao, N Araki, M Myhre, C Fernandes, ...
Proceedings of the National Academy of Sciences 103 (42), 15582-15587, 2006
7712006
Assembling millions of short DNA sequences using SSAKE
RL Warren, GG Sutton, SJM Jones, RA Holt
Bioinformatics 23 (4), 500-501, 2007
6972007
Neo-antigens predicted by tumor genome meta-analysis correlate with increased patient survival
SD Brown, RL Warren, EA Gibb, SD Martin, JJ Spinelli, BH Nelson, ...
Genome research 24 (5), 743-750, 2014
6382014
ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter
SD Jackman, BP Vandervalk, H Mohamadi, J Chu, S Yeo, SA Hammond, ...
Genome research 27 (5), 768-777, 2017
5622017
Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing
JD Freeman, RL Warren, JR Webb, BH Nelson, RA Holt
Genome research 19 (10), 1817-1824, 2009
4862009
Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 millioná…
RL Warren, JD Freeman, T Zeng, G Choe, S Munro, R Moore, JR Webb, ...
Genome research 21 (5), 790-797, 2011
3842011
Co-occurrence of anaerobic bacteria in colorectal carcinomas
RL Warren, DJ Freeman, S Pleasance, P Watson, RA Moore, K Cochrane, ...
Microbiome 1 (1), 1-12, 2013
3102013
Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach
MN Bainbridge, RL Warren, M Hirst, T Romanuik, T Zeng, A Go, ...
BMC genomics 7, 1-11, 2006
2662006
Complete haplotype sequence of the human immunoglobulin heavy-chain variable, diversity, and joining genes and characterization of allelic and copy-number variation
CT Watson, KM Steinberg, J Huddleston, RL Warren, M Malig, J Schein, ...
The American Journal of Human Genetics 92 (4), 530-546, 2013
2422013
Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism
RL Warren, CI Keeling, MMS Yuen, A Raymond, GA Taylor, ...
The Plant Journal 83 (2), 189-212, 2015
2212015
The cumate gene-switch: a system for regulated expression in mammalian cells
A Mullick, Y Xu, R Warren, M Koutroumanis, C Guilbault, S Broussau, ...
BMC biotechnology 6 (1), 1-18, 2006
2172006
LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads
RL Warren, C Yang, BP Vandervalk, B Behsaz, A Lagman, SJM Jones, ...
GigaScience 4 (1), s13742-015-0076-3, 2015
2062015
Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts
CA D’souza, JW Kronstad, G Taylor, R Warren, M Yuen, G Hu, WH Jung, ...
MBio 2 (1), 10.1128/mbio. 00342-10, 2011
2032011
NanoSim: nanopore sequence read simulator based on statistical characterization
C Yang, J Chu, RL Warren, I Birol
GigaScience 6 (4), gix010, 2017
1932017
Derivation of HLA types from shotgun sequence datasets
RL Warren, G Choe, DJ Freeman, M Castellarin, S Munro, R Moore, ...
Genome medicine 4, 1-8, 2012
1802012
ARCS: scaffolding genome drafts with linked reads
S Yeo, L Coombe, RL Warren, J Chu, I Birol
Bioinformatics 34 (5), 725-731, 2018
1642018
Brain microbial populations in HIV/AIDS: α-proteobacteria predominate independent of host immune status
WG Branton, KK Ellestad, F Maingat, BM Wheatley, E Rud, RL Warren, ...
PloS one 8 (1), e54673, 2013
1532013
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