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Adam M Novak
Adam M Novak
Senior Software Engineer, UC Santa Cruz Genomics Institute, Computational Genomics Laboratory
Dirección de correo verificada de soe.ucsc.edu
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Citado por
Citado por
Año
Toil enables reproducible, open source, big biomedical data analyses
J Vivian, AA Rao, FA Nothaft, C Ketchum, J Armstrong, A Novak, J Pfeil, ...
Nature Biotechnology 35 (4), 314-316, 2017
5712017
Variation graph toolkit improves read mapping by representing genetic variation in the reference
E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ...
Nature biotechnology 36 (9), 875-879, 2018
3402018
Human-specific NOTCH2NL genes affect notch signaling and cortical neurogenesis
IT Fiddes, GA Lodewijk, M Mooring, CM Bosworth, AD Ewing, ...
Cell 173 (6), 1356-1369. e22, 2018
3172018
Computational pan-genomics: status, promises and challenges
Briefings in bioinformatics 19 (1), 118-135, 2018
2482018
Genome graphs and the evolution of genome inference
B Paten, AM Novak, JM Eizenga, E Garrison
Genome research 27 (5), 665-676, 2017
2382017
Genotyping structural variants in pangenome graphs using the vg toolkit
G Hickey, D Heller, J Monlong, JA Sibbesen, J Sirén, J Eizenga, ...
Genome biology 21 (1), 1-17, 2020
1002020
Progressive Cactus is a multiple-genome aligner for the thousand-genome era
J Armstrong, G Hickey, M Diekhans, IT Fiddes, AM Novak, A Deran, ...
Nature 587 (7833), 246-251, 2020
902020
Pangenome graphs
JM Eizenga, AM Novak, JA Sibbesen, S Heumos, A Ghaffaari, G Hickey, ...
Annual review of genomics and human genetics 21, 139, 2020
672020
TumorMap: exploring the molecular similarities of cancer samples in an interactive portal
Y Newton, AM Novak, T Swatloski, DC McColl, S Chopra, K Graim, ...
Cancer research 77 (21), e111-e114, 2017
612017
Haplotype-aware graph indexes
J Sirén, E Garrison, AM Novak, B Paten, R Durbin
Bioinformatics 36 (2), 400-407, 2020
562020
Superbubbles, ultrabubbles, and cacti
B Paten, JM Eizenga, YM Rosen, AM Novak, E Garrison, G Hickey
Journal of Computational Biology 25 (7), 649-663, 2018
552018
Genome graphs
AM Novak, G Hickey, E Garrison, S Blum, A Connelly, A Dilthey, ...
BioRxiv, 101378, 2017
542017
A graph extension of the positional Burrows–Wheeler transform and its applications
AM Novak, E Garrison, B Paten
Algorithms for Molecular Biology 12 (1), 1-12, 2017
532017
A graph-based approach to diploid genome assembly
S Garg, M Rautiainen, AM Novak, E Garrison, R Durbin, T Marschall
Bioinformatics 34 (13), i105-i114, 2018
502018
Mapping to a reference genome structure
B Paten, A Novak, D Haussler
arXiv preprint arXiv:1404.5010, 2014
502014
Pangenomics enables genotyping of known structural variants in 5202 diverse genomes
J Sirén, J Monlong, X Chang, AM Novak, JM Eizenga, C Markello, ...
Science 374 (6574), abg8871, 2021
41*2021
The NIH BD2K center for big data in translational genomics
B Paten, M Diekhans, BJ Druker, S Friend, J Guinney, N Gassner, ...
Journal of the American Medical Informatics Association 22 (6), 1143-1147, 2015
362015
Sequence variation aware genome references and read mapping with the variation graph toolkit
E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ...
BioRxiv, 234856, 2017
332017
Sequence tube maps: making graph genomes intuitive to commuters
W Beyer, AM Novak, G Hickey, J Chan, V Tan, B Paten, DR Zerbino
Bioinformatics 35 (24), 5318, 2019
172019
Modeling the role of negative cooperativity in metabolic regulation and homeostasis
EC Bush, AE Clark, CM DeBoever, LE Haynes, S Hussain, S Ma, ...
PLoS One 7 (11), e48920, 2012
172012
El sistema no puede realizar la operación en estos momentos. Inténtalo de nuevo más tarde.
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