Adam M Novak

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Benedict PatenProfessor; Associate Director, UC Santa Cruz Genomics Institute, University of CaliforniaDirección de correo verificada de ucsc.edu
Erik GarrisonAssociate Professor, University of Tennessee Health Science CenterDirección de correo verificada de uthsc.edu
Jordan M EizengaPostdoctoral Researcher, Genomics Institute, University of California Santa CruzDirección de correo verificada de ucsc.edu
Jouni SirénUC Santa Cruz Genomics InstituteDirección de correo verificada de ucsc.edu
David HausslerScientific Director, UC Santa Cruz Genomics Institute, University of California, Santa CruzDirección de correo verificada de soe.ucsc.edu
Richard DurbinDept of Genetics, University of CambridgeDirección de correo verificada de cam.ac.uk
Eric T. DawsonNVIDIADirección de correo verificada de nvidia.com
Michael F. Linindependent (mlin.net LLC)Dirección de correo verificada de mlin.net
Joshua M StuartUC Santa Cruz Genomics InstituteDirección de correo verificada de ucsc.edu
Yohei RosenNYU School of Medicine/UC Santa Cruz Genomics InstituteDirección de correo verificada de ucsc.edu
Kyle EllrottOregon Health and Science UniversityDirección de correo verificada de ohsu.edu
Alana S. WeinsteinUniversity of CaliforniaDirección de correo verificada de ucsc.edu

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Adam M Novak

Senior Software Engineer, UC Santa Cruz Genomics Institute, Computational Genomics Laboratory

Dirección de correo verificada de soe.ucsc.edu

Bioinformatics


Título Ordenar por citas Ordenar por año Ordenar por título	Citado por Citado por	Año
Toil enables reproducible, open source, big biomedical data analyses J Vivian, AA Rao, FA Nothaft, C Ketchum, J Armstrong, A Novak, J Pfeil, ... Nature Biotechnology 35 (4), 314-316, 2017	1130	2017
Variation graph toolkit improves read mapping by representing genetic variation in the reference E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ... Nature biotechnology 36 (9), 875-879, 2018	617	2018
A draft human pangenome reference WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ... Nature 617 (7960), 312-324, 2023	552	2023
Human-specific NOTCH2NL genes affect notch signaling and cortical neurogenesis IT Fiddes, GA Lodewijk, M Mooring, CM Bosworth, AD Ewing, ... Cell 173 (6), 1356-1369. e22, 2018	525	2018
Progressive Cactus is a multiple-genome aligner for the thousand-genome era J Armstrong, G Hickey, M Diekhans, IT Fiddes, AM Novak, A Deran, ... Nature 587 (7833), 246-251, 2020	400	2020
Computational pan-genomics: status, promises and challenges Briefings in bioinformatics 19 (1), 118-135, 2018	357	2018
Genome graphs and the evolution of genome inference B Paten, AM Novak, JM Eizenga, E Garrison Genome research 27 (5), 665-676, 2017	342	2017
The Human Pangenome Project: a global resource to map genomic diversity T Wang, L Antonacci-Fulton, K Howe, HA Lawson, JK Lucas, AM Phillippy, ... Nature 604 (7906), 437-446, 2022	335	2022
Pangenomics enables genotyping of known structural variants in 5202 diverse genomes J Sirén, J Monlong, X Chang, AM Novak, JM Eizenga, C Markello, ... Science 374 (6574), abg8871, 2021	234*	2021
Pangenome graphs JM Eizenga, AM Novak, JA Sibbesen, S Heumos, A Ghaffaari, G Hickey, ... Annual review of genomics and human genetics 21 (1), 139-162, 2020	229	2020
Genotyping structural variants in pangenome graphs using the vg toolkit G Hickey, D Heller, J Monlong, JA Sibbesen, J Sirén, J Eizenga, ... Genome biology 21, 1-17, 2020	222	2020
Pangenome graph construction from genome alignments with Minigraph-Cactus G Hickey, J Monlong, J Ebler, AM Novak, JM Eizenga, Y Gao, T Marschall, ... Nature biotechnology 42 (4), 663-673, 2024	119	2024
Haplotype-aware graph indexes J Sirén, E Garrison, AM Novak, B Paten, R Durbin Bioinformatics 36 (2), 400-407, 2020	96	2020
TumorMap: exploring the molecular similarities of cancer samples in an interactive portal Y Newton, AM Novak, T Swatloski, DC McColl, S Chopra, K Graim, ... Cancer research 77 (21), e111-e114, 2017	81	2017
Superbubbles, ultrabubbles, and cacti B Paten, JM Eizenga, YM Rosen, AM Novak, E Garrison, G Hickey Journal of Computational Biology 25 (7), 649-663, 2018	77	2018
A graph-based approach to diploid genome assembly S Garg, M Rautiainen, AM Novak, E Garrison, R Durbin, T Marschall Bioinformatics 34 (13), i105-i114, 2018	72	2018
A graph extension of the positional Burrows–Wheeler transform and its applications AM Novak, E Garrison, B Paten Algorithms for Molecular Biology 12, 1-12, 2017	63	2017
Genome graphs AM Novak, G Hickey, E Garrison, S Blum, A Connelly, A Dilthey, ... BioRxiv, 101378, 2017	57	2017
Sequence tube maps: making graph genomes intuitive to commuters W Beyer, AM Novak, G Hickey, J Chan, V Tan, B Paten, DR Zerbino Bioinformatics 35 (24), 5318-5320, 2019	52	2019
Mapping to a reference genome structure B Paten, A Novak, D Haussler arXiv preprint arXiv:1404.5010, 2014	48	2014

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