Kathleen M. Jagodnik, Ph.D.
Kathleen M. Jagodnik, Ph.D.
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Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
MV Kuleshov, MR Jones, AD Rouillard, NF Fernandez, Q Duan, Z Wang, ...
Nucleic acids research 44 (W1), W90-W97, 2016
Gene set knowledge discovery with enrichr
Z Xie, A Bailey, MV Kuleshov, DJB Clarke, JE Evangelista, SL Jenkins, ...
Current protocols 1 (3), e90, 2021
Massive mining of publicly available RNA-seq data from human and mouse
A Lachmann, D Torre, AB Keenan, KM Jagodnik, HJ Lee, L Wang, ...
Nature communications 9 (1), 1-10, 2018
The library of integrated network-based cellular signatures NIH program: system-level cataloging of human cells response to perturbations
AB Keenan, SL Jenkins, KM Jagodnik, S Koplev, E He, D Torre, Z Wang, ...
Cell systems 6 (1), 13-24, 2018
ChEA3: transcription factor enrichment analysis by orthogonal omics integration
AB Keenan, D Torre, A Lachmann, AK Leong, ML Wojciechowicz, V Utti, ...
Nucleic acids research 47 (W1), W212-W224, 2019
Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd
Z Wang, CD Monteiro, KM Jagodnik, NF Fernandez, GW Gundersen, ...
Nature communications 7 (1), 1-11, 2016
Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data
A Koleti, R Terryn, V Stathias, C Chung, DJ Cooper, JP Turner, D Vidović, ...
Nucleic acids research 46 (D1), D558-D566, 2018
Correcting under-reported COVID-19 case numbers
A Lachmann
MedRxiv, 2020.03. 14.20036178, 2020
Optimization and evaluation of a proportional derivative controller for planar arm movement
KM Jagodnik, AJ van den Bogert
Journal of Biomechanics 43 (6), 1086-1091, 2010
Training an actor-critic reinforcement learning controller for arm movement using human-generated rewards
KM Jagodnik, PS Thomas, AJ van den Bogert, MS Branicky, RF Kirsch
IEEE Transactions on Neural Systems and Rehabilitation Engineering 25 (10 …, 2017
The COVID-19 drug and gene set library
MV Kuleshov, DJ Stein, DJB Clarke, E Kropiwnicki, KM Jagodnik, A Bartal, ...
Patterns 1 (6), 100090, 2020
Correcting under-reported COVID-19 case numbers: estimating the true scale of the pandemic
KM Jagodnik, F Ray, FM Giorgi, A Lachmann
medRxiv, 2020
smartAPI: towards a more intelligent network of web APIs
A Zaveri, S Dastgheib, C Wu, T Whetzel, R Verborgh, P Avillach, G Korodi, ...
European Semantic Web Conference, 154-169, 2017
Application of the actor-critic architecture to functional electrical stimulation control of a human arm
PS Thomas, A van den Bogert, K Jagodnik, M Branicky
Twenty-First IAAI Conference, 2009
Connectivity mapping: methods and applications
AB Keenan, ML Wojciechowicz, Z Wang, KM Jagodnik, SL Jenkins, ...
Annual Review of Biomedical Data Science, 69-92, 2019
Appyters: Turning Jupyter Notebooks into data-driven web apps
DJB Clarke, M Jeon, DJ Stein, N Moiseyev, E Kropiwnicki, C Dai, Z Xie, ...
Patterns 2 (3), 100213, 2021
FAIRshake: toolkit to evaluate the FAIRness of research digital resources
DJB Clarke, L Wang, A Jones, ML Wojciechowicz, D Torre, KM Jagodnik, ...
Cell systems 9 (5), 417-421, 2019
Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop
KM Jagodnik, S Koplev, SL Jenkins, L Ohno-Machado, B Paten, ...
Journal of biomedical informatics 71, 49-57, 2017
Human-like rewards to train a reinforcement learning controller for planar arm movement
KM Jagodnik, PS Thomas, AJ van den Bogert, MS Branicky, RF Kirsch
IEEE Transactions on Human-Machine Systems 46 (5), 723-733, 2016
Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center
V Stathias, A Koleti, D Vidović, DJ Cooper, KM Jagodnik, R Terryn, ...
Scientific data 5 (1), 1-14, 2018
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Artículos 1–20