Megan Wojciechowicz
Megan Wojciechowicz
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Gene set knowledge discovery with enrichr
Z Xie, A Bailey, MV Kuleshov, DJB Clarke, JE Evangelista, SL Jenkins, ...
Current protocols 1 (3), e90, 2021
ChEA3: transcription factor enrichment analysis by orthogonal omics integration
AB Keenan, D Torre, A Lachmann, AK Leong, ML Wojciechowicz, V Utti, ...
Nucleic acids research 47 (W1), W212-W224, 2019
modEnrichr: a suite of gene set enrichment analysis tools for model organisms
MV Kuleshov, JEL Diaz, ZN Flamholz, AB Keenan, A Lachmann, ...
Nucleic acids research 47 (W1), W183-W190, 2019
Geneshot: search engine for ranking genes from arbitrary text queries
A Lachmann, BM Schilder, ML Wojciechowicz, D Torre, MV Kuleshov, ...
Nucleic acids research 47 (W1), W571-W577, 2019
Connectivity mapping: methods and applications
AB Keenan, ML Wojciechowicz, Z Wang, KM Jagodnik, SL Jenkins, ...
Annual Review of Biomedical Data Science, 69-92, 2019
Appyters: Turning Jupyter Notebooks into data-driven web apps
DJB Clarke, M Jeon, DJ Stein, N Moiseyev, E Kropiwnicki, C Dai, Z Xie, ...
Patterns 2 (3), 100213, 2021
FAIRshake: toolkit to evaluate the FAIRness of research digital resources
DJB Clarke, L Wang, A Jones, ML Wojciechowicz, D Torre, KM Jagodnik, ...
Cell systems 9 (5), 417-421, 2019
Modulating the transcriptional landscape of SARS-CoV-2 as an effective method for developing antiviral compounds
DA Hoagland, DJB Clarke, R Møller, Y Han, L Yang, ML Wojciechowicz, ...
Biorxiv, 2020
Genetic driver mutations introduced in identical cell‐of‐origin in murine glioblastoma reveal distinct immune landscapes but similar response to checkpoint blockade
Z Chen, CJ Herting, JL Ross, B Gabanic, M Puigdelloses Vallcorba, ...
Glia 68 (10), 2148-2166, 2020
GPR84: an immune response dial?
ML Wojciechowicz, A Ma’ayan
Nature reviews. Drug discovery, 374, 2020
FAIRshake: toolkit to evaluate the findability, accessibility, interoperability, and reusability of research digital resources
DJB Clarke, L Wang, A Jones, ML Wojciechowicz, D Torre, KM Jagodnik, ...
BioRxiv, 657676, 2019
Connectivity mapping identifies BI-2536 as a potential drug to treat diabetic kidney disease
L Zhang, Z Wang, R Liu, Z Li, J Lin, ML Wojciechowicz, J Huang, K Lee, ...
Diabetes 70 (2), 589-602, 2021
Predicting lyme disease from patients' peripheral blood mononuclear cells profiled with RNA-sequencing
DJB Clarke, AW Rebman, A Bailey, ML Wojciechowicz, SL Jenkins, ...
Frontiers in immunology 12, 636289, 2021
Extracellular proteolytic cleavage of peptide-linked antibody-drug conjugates promotes bystander killing of cancer cells
MH Lam, J Lucas, A Maderna, H Wald, M Wojciechowicz, R Dushin, ...
Cancer research 74 (19_Supplement), 4837-4837, 2014
SigCom LINCS: data and metadata search engine for a million gene expression signatures
JE Evangelista, DJB Clarke, Z Xie, A Lachmann, M Jeon, K Chen, ...
Nucleic Acids Research, 2022
Transforming L1000 profiles to RNA-seq-like profiles with deep learning
M Jeon, Z Xie, JE Evangelista, ML Wojciechowicz, DJB Clarke, A Ma’ayan
BMC bioinformatics 23 (1), 1-18, 2022
Getting Started with LINCS Datasets and Tools
Z Xie, E Kropiwnicki, ML Wojciechowicz, KM Jagodnik, I Shu, A Bailey, ...
Current Protocols 2 (7), e487, 2022
Supplementary Figures for
AB Keenan, D Torre, A Lachmann, AK Leong, ML Wojciechowicz
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