Alex H Wagner, PhD
Alex H Wagner, PhD
NHGRI Genomic Innovator, Asst. Prof. at Nationwide Children's Hospital and the Ohio State University
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DGIdb 3.0: a redesign and expansion of the drug–gene interaction database
KC Cotto, AH Wagner, YY Feng, S Kiwala, AC Coffman, G Spies, ...
Nucleic acids research 46 (D1), D1068-D1073, 2018
CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer
M Griffith, NC Spies, K Krysiak, JF McMichael, AC Coffman, AM Danos, ...
Nature genetics 49 (2), 170-174, 2017
DGIdb 2.0: mining clinically relevant drug–gene interactions
AH Wagner, AC Coffman, BJ Ainscough, NC Spies, ZL Skidmore, ...
Nucleic acids research 44 (D1), D1036-D1044, 2016
GenVisR: genomic visualizations in R
ZL Skidmore, AH Wagner, R Lesurf, KM Campbell, J Kunisaki, OL Griffith, ...
Bioinformatics 32 (19), 3012-3014, 2016
Non-exomic and synonymous variants in ABCA4 are an important cause of Stargardt disease
TA Braun, RF Mullins, AH Wagner, JL Andorf, RM Johnston, BB Bakall, ...
Human molecular genetics 22 (25), 5136-5145, 2013
Integration of the Drug–Gene Interaction Database (DGIdb 4.0) with open crowdsource efforts
SL Freshour, S Kiwala, KC Cotto, AC Coffman, JF McMichael, JJ Song, ...
Nucleic acids research 49 (D1), D1144-D1151, 2021
Exon-level expression profiling of ocular tissues
AH Wagner, VN Anand, WH Wang, JE Chatterton, D Sun, AR Shepard, ...
Experimental eye research 111, 105-111, 2013
Transcriptomic analysis across nasal, temporal, and macular regions of human neural retina and RPE/choroid by RNA-Seq
SS Whitmore, AH Wagner, AP DeLuca, AV Drack, EM Stone, BA Tucker, ...
Experimental eye research 129, 93-106, 2014
DoCM: a database of curated mutations in cancer
BJ Ainscough, M Griffith, AC Coffman, AH Wagner, J Kunisaki, ...
Nature methods 13 (10), 806-807, 2016
A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer
AH Wagner, B Walsh, G Mayfield, D Tamborero, D Sonkin, K Krysiak, ...
Nature genetics 52 (4), 448-457, 2020
Recurrent WNT pathway alterations are frequent in relapsed small cell lung cancer
AH Wagner, S Devarakonda, ZL Skidmore, K Krysiak, A Ramu, L Trani, ...
Nature communications 9 (1), 1-11, 2018
Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples
EK Barnell, P Ronning, KM Campbell, K Krysiak, BJ Ainscough, LM Sheta, ...
Genetics in Medicine 21 (4), 972-981, 2019
A deep learning approach to automate refinement of somatic variant calling from cancer sequencing data
BJ Ainscough, EK Barnell, P Ronning, KM Campbell, AH Wagner, ...
Nature genetics 50 (12), 1735-1743, 2018
Comprehensive genomic analysis reveals FLT3 activation and a therapeutic strategy for a patient with relapsed adult B-lymphoblastic leukemia
M Griffith, OL Griffith, K Krysiak, ZL Skidmore, MJ Christopher, JM Klco, ...
Experimental hematology 44 (7), 603-613, 2016
Optic nerve crush induces spatial and temporal gene expression patterns in retina and optic nerve of BALB/cJ mice
TP Sharma, CM McDowell, Y Liu, AH Wagner, D Thole, BP Faga, ...
Molecular neurodegeneration 9 (1), 1-19, 2014
GA4GH: International policies and standards for data sharing across genomic research and healthcare
HL Rehm, AJH Page, L Smith, JB Adams, G Alterovitz, LJ Babb, ...
Cell genomics 1 (2), 100029, 2021
FHIR Genomics: enabling standardization for precision medicine use cases
G Alterovitz, B Heale, J Jones, D Kreda, F Lin, L Liu, X Liu, KD Mandl, ...
NPJ genomic medicine 5 (1), 1-4, 2020
Artificial intelligence and pathology: From principles to practice and future applications in histomorphology and molecular profiling
A Stenzinger, M Alber, M Allgäuer, P Jurmeister, M Bockmayr, J Budczies, ...
Seminars in cancer biology, 2021
The GA4GH Variation Representation Specification: A computational framework for variation representation and federated identification
AH Wagner, L Babb, G Alterovitz, M Baudis, M Brush, DL Cameron, ...
Cell genomics 1 (2), 100027, 2021
Collaborative, multidisciplinary evaluation of cancer variants through virtual molecular tumor boards informs local clinical practices
S Rao, B Pitel, AH Wagner, SM Boca, M McCoy, I King, S Gupta, BH Park, ...
JCO Clinical Cancer Informatics 4, 602-613, 2020
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