Evan Paull
Evan Paull
Principal Scientist, Schrödinger
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Comprehensive molecular portraits of human breast tumours
Brigham & Women’s Hospital & Harvard Medical School Chin Lynda 9 11 Park ...
Nature 490 (7418), 61-70, 2012
The immune landscape of cancer
V Thorsson, DL Gibbs, SD Brown, D Wolf, DS Bortone, THO Yang, ...
Immunity 48 (4), 812-830. e14, 2018
Comprehensive molecular characterization of clear cell renal cell carcinoma
Cancer Genome Atlas Research Network Analysis working group: Baylor College ...
Nature 499 (7456), 43-49, 2013
Comprehensive, integrative genomic analysis of diffuse lower-grade gliomas
Cancer Genome Atlas Research Network
New England Journal of Medicine 372 (26), 2481-2498, 2015
Comprehensive molecular characterization of urothelial bladder carcinoma
Cancer Genome Atlas Research Network
Nature 507 (7492), 315, 2014
Integrated genomic characterization of papillary thyroid carcinoma
N Agrawal, R Akbani, B áArman Aksoy, A Ally, H Arachchi, SL Asa, ...
Cell 159 (3), 676-690, 2014
Inferring causal molecular networks: empirical assessment through a community-based effort
SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ...
Nature methods 13 (4), 310-318, 2016
Phosphoproteome integration reveals patient-specific networks in prostate cancer
JM Drake, EO Paull, NA Graham, JK Lee, BA Smith, B Titz, T Stoyanova, ...
Cell 166 (4), 1041-1054, 2016
Discovering causal pathways linking genomic events to transcriptional states using Tied Diffusion Through Interacting Events (TieDIE)
EO Paull, DE Carlin, M Niepel, PK Sorger, D Haussler, JM Stuart
Bioinformatics 29 (21), 2757-2764, 2013
Pathway-based genomics prediction using generalized elastic net
A Sokolov, DE Carlin, EO Paull, R Baertsch, JM Stuart
PLoS computational biology 12 (3), e1004790, 2016
One-class detection of cell states in tumor subtypes
A Sokolov, EO Paull, JM Stuart
Biocomputing 2016: Proceedings of the Pacific Symposium, 405-416, 2016
Common and cell-type specific responses to anti-cancer drugs revealed by high throughput transcript profiling
M Niepel, M Hafner, Q Duan, Z Wang, EO Paull, M Chung, X Lu, JM Stuart, ...
Nature communications 8 (1), 1-11, 2017
A modular master regulator landscape controls cancer transcriptional identity
EO Paull, A Aytes, SJ Jones, PS Subramaniam, FM Giorgi, EF Douglass, ...
Cell 184 (2), 334-351. e20, 2021
The number of titrated microRNA species dictates ceRNA regulation
HS Chiu, MR Martínez, EV . Komissarova, D Llobet-Navas, M Bansal, ...
Nucleic acids research 46 (9), 4354-4369, 2018
SJARACNe: a scalable software tool for gene network reverse engineering from big data
A Khatamian, EO Paull, A Califano, J Yu
Bioinformatics 35 (12), 2165-2166, 2019
The UCSC Interaction Browser: multidimensional data views in pathway context
CK Wong, CJ Vaske, S Ng, JZ Sanborn, SC Benz, D Haussler, JM Stuart
Nucleic Acids Research 41 (W1), W218-W224, 2013
A community challenge for inferring genetic predictors of gene essentialities through analysis of a functional screen of cancer cell lines
M Gönen, BA Weir, GS Cowley, F Vazquez, Y Guan, A Jaiswal, ...
Cell systems 5 (5), 485-497. e3, 2017
Molecular pathways: extracting medical knowledge from high-throughput genomic data
TC Goldstein, EO Paull, MJ Ellis, JM Stuart
Clinical Cancer Research 19 (12), 3114-3120, 2013
The master regulator protein BAZ2B can reprogram human hematopoietic lineage-committed progenitors into a multipotent state
K Arumugam, W Shin, V Schiavone, L Vlahos, X Tu, D Carnevali, ...
Cell reports 33 (10), 108474, 2020
Prophetic Granger Causality to infer gene regulatory networks
DE Carlin, EO Paull, K Graim, CK Wong, A Bivol, P Ryabinin, K Ellrott, ...
PloS one 12 (12), e0170340, 2017
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