Will Fischer
Will Fischer
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Tracking changes in SARS-CoV-2 Spike: evidence that D614G increases infectivity of the COVID-19 virus
B Korber, WM Fischer, S Gnanakaran, H Yoon, J Theiler, W Abfalterer, ...
Cell 182 (4), 812-827. e19, 2020
Molecular evidence for the early evolution of photosynthesis
J Xiong, WM Fischer, K Inoue, M Nakahara, CE Bauer
Science 289 (5485), 1724-30, 2000
Polyvalent vaccines for optimal coverage of potential T-cell epitopes in global HIV-1 variants
W Fischer, S Perkins, J Theiler, T Bhattacharya, K Yusim, R Funkhouser, ...
Nature medicine 13 (1), 100-106, 2007
Spike mutation pipeline reveals the emergence of a more transmissible form of SARS-CoV-2
B Korber, W Fischer, SG Gnanakaran, H Yoon, J Theiler, W Abfalterer, ...
bioRxiv, 2020
Mosaic HIV-1 vaccines expand the breadth and depth of cellular immune responses in rhesus monkeys
DH Barouch, KL O'Brien, NL Simmons, SL King, P Abbink, LF Maxfield, ...
Nature medicine 16 (3), 319-323, 2010
Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing
W Fischer, VV Ganusov, EE Giorgi, PT Hraber, BF Keele, T Leitner, ...
PLoS One 5 (8), e12303, 2010
SARS-CoV-2 variant B. 1.1. 7 is susceptible to neutralizing antibodies elicited by ancestral Spike vaccines
X Shen, H Tang, C McDanal, K Wagh, W Fischer, J Theiler, H Yoon, D Li, ...
Cell host & microbe 29 (4), 529-539. e3, 2021
HIV sequence compendium 2009
C Kuiken, T Leitner, B Foley, B Hahn, P Marx, F McCutchan, S Wolinsky, ...
Document LA-UR, 06-0680, 2009
Mosaic vaccines elicit CD8+ T lymphocyte responses that confer enhanced immune coverage of diverse HIV strains in monkeys
S Santra, HX Liao, R Zhang, M Muldoon, S Watson, W Fischer, J Theiler, ...
Nature medicine 16 (3), 324-328, 2010
Immunological and virological mechanisms of vaccine-mediated protection against SIV and HIV
M Roederer, BF Keele, SD Schmidt, RD Mason, HC Welles, W Fischer, ...
Nature 505 (7484), 502-508, 2014
Human leukocyte antigen–associated sequence polymorphisms in hepatitis C virus reveal reproducible immune responses and constraints on viral evolution
J Timm, B Li, MG Daniels, T Bhattacharya, LL Reyor, R Allgaier, ...
Hepatology 46 (2), 339-349, 2007
Human APOBEC3 induced mutation of human immunodeficiency virus type-1 contributes to adaptation and evolution in natural infection
EY Kim, R Lorenzo-Redondo, SJ Little, YS Chung, PK Phalora, IM Berry, ...
PLoS pathogens 10 (7), e1004281, 2014
Expanded breadth of the T-cell response to mosaic human immunodeficiency virus type 1 envelope DNA vaccination
WP Kong, L Wu, TC Wallstrom, W Fischer, ZY Yang, SY Ko, NL Letvin, ...
Journal of virology 83 (5), 2201-2215, 2009
Evidence from small-subunit ribosomal RNA sequences for a fungal origin of Microsporidia
WM Fischer, JD Palmer
Molecular Phylogenetics and Evolution 36 (3), 606–622, 2005
Web-based design and evaluation of T-cell vaccine candidates
J Thurmond, H Yoon, C Kuiken, K Yusim, S Perkins, J Theiler, ...
Bioinformatics 24 (14), 1639-1640, 2008
Coping with viral diversity in HIV vaccine design: a response to Nickle et al.
W Fischer, HX Liao, BF Haynes, NL Letvin, B Korber
PLoS computational biology 4 (1), e15, 2008
Rare HIV-1 transmitted/founder lineages identified by deep viral sequencing contribute to rapid shifts in dominant quasispecies during acute and early infection
GH Kijak, E Sanders-Buell, AL Chenine, MA Eller, N Goonetilleke, ...
PLoS Pathogens 13 (7), e1006510, 2017
Increased sequence diversity coverage improves detection of HIV-specific T cell responses
N Frahm, DE Kaufmann, K Yusim, M Muldoon, C Kesmir, CH Linde, ...
The Journal of Immunology 179 (10), 6638-6650, 2007
A multiple-alignment based primer design algorithm for genetically highly variable DNA targets.
J Brodin, M Krishnamoorthy, G Athreya, W Fischer, PT Hraber, C Gleasner, ...
BMC bioinformatics 14 (1), 255, 2013
Distinct Evolutionary Pressures Underlie Diversity in Simian Immunodeficiency Virus and Human Immunodeficiency Virus Lineages
W Fischer, C Apetrei, ML Santiago, Y Li, R Gautam, I Pandrea, GM Shaw, ...
Journal of Virology 86 (24), 13217-13231, 2012
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