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Feng Cui, Ph.D.
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Cited by
Year
Maize Mu Transposons Are Targeted to the 5′ Untranslated Region of the gl8 Gene and Sequences Flanking Mu Target-Site Duplications Exhibit Nonrandom …
CR Dietrich, F Cui, ML Packila, J Li, DA Ashlock, BJ Nikolau, PS Schnable
Genetics 160 (2), 697-716, 2002
1432002
Impact of Alu repeats on the evolution of human p53 binding sites
F Cui, MV Sirotin, VB Zhurkin
Biology direct 6, 1-20, 2011
1002011
Structure-based Analysis of DNA Sequence Patterns Guiding Nucleosome Positioning in vitro
F Cui, VB Zhurkin
Journal of Biomolecular Structure and Dynamics 27 (6), 821-841, 2010
892010
Distinctive sequence patterns in metazoan and yeast nucleosomes: implications for linker histone binding to AT-rich and methylated DNA
F Cui, VB Zhurkin
Nucleic acids research 37 (9), 2818-2829, 2009
862009
GNE: a deep learning framework for gene network inference by aggregating biological information
K Kc, R Li, F Cui, Q Yu, AR Haake
BMC systems biology 13, 1-14, 2019
722019
BioVR: a platform for virtual reality assisted biological data integration and visualization
JF Zhang, AR Paciorkowski, PA Craig, F Cui
BMC bioinformatics 20, 1-10, 2019
582019
Noncoding RNAs binding to the nucleoid protein HU in Escherichia coli
M Macvanin, R Edgar, F Cui, A Trostel, V Zhurkin, S Adhya
Journal of bacteriology 194 (22), 6046-6055, 2012
542012
Transcriptional activation of yeast genes disrupts intragenic nucleosome phasing
F Cui, HA Cole, DJ Clark, VB Zhurkin
Nucleic acids research 40 (21), 10753-10764, 2012
462012
Rotational positioning of nucleosomes facilitates selective binding of p53 to response elements associated with cell cycle arrest
F Cui, VB Zhurkin
Nucleic acids research 42 (2), 836-847, 2013
432013
Histopathological distinction of non-invasive and invasive bladder cancers using machine learning approaches
PN Yin, K Kc, S Wei, Q Yu, R Li, AR Haake, H Miyamoto, F Cui
BMC medical informatics and decision making 20, 1-11, 2020
402020
p53 binding sites in normal and cancer cells are characterized by distinct chromatin context
F Bao, PR LoVerso, JN Fisk, VB Zhurkin, F Cui
Cell Cycle 16 (21), 2073-2085, 2017
382017
Predicting biomedical interactions with higher-order graph convolutional networks
KC Kishan, R Li, F Cui, AR Haake
IEEE/ACM transactions on computational biology and bioinformatics 19 (2 …, 2021
352021
Novel nucleosomal particles containing core histones and linker DNA but no histone H1
HA Cole, F Cui, J Ocampo, TL Burke, T Nikitina, V Nagarajavel, ...
Nucleic acids research 44 (2), 573-581, 2016
352016
Topological diversity of chromatin fibers: Interplay between nucleosome repeat length, DNA linking number and the level of transcription
D Norouzi, A Katebi, F Cui, VB Zhurkin
AIMS biophysics 2 (4), 613, 2015
282015
Refinement of NMR-determined protein structures with database derived distance constraints
F Cui, R Jernigan, Z Wu
Journal of Bioinformatics and Computational Biology 3 (06), 1315-1329, 2005
282005
A computational pipeline for cross-species analysis of RNA-seq data using R and bioconductor
PR LoVerso, F Cui
Bioinformatics and biology insights 9, BBI. S30884, 2015
222015
Prediction of nucleosome rotational positioning in yeast and human genomes based on sequence-dependent DNA anisotropy
F Cui, L Chen, PR LoVerso, VB Zhurkin
BMC bioinformatics 15, 1-9, 2014
222014
Cross-species Transcriptomic Comparison of In Vitro and In Vivo Mammalian Neural Cells
PR LoVerso, CM Wachter, F Cui
Bioinformatics and Biology insights 9, BBI. S33124, 2015
192015
PIDD: database for protein inter-atomic distance distributions
D Wu, F Cui, R Jernigan, Z Wu
Nucleic acids research 35 (suppl_1), D202-D207, 2007
172007
The proto-chromatosome: A fundamental subunit of chromatin?
J Ocampo, F Cui, VB Zhurkin, DJ Clark
Nucleus 7 (4), 382-387, 2016
142016
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Articles 1–20