| Finishing the euchromatic sequence of the human genome International Human Genome Sequencing Consortium Nature 431 (7011), 931-945, 2004 | 4872 | 2004 |
| Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution Project management: Fulton Lucinda A. 1 Mardis Elaine R. 1 Wilson Richard K. 1 Nature 432 (7018), 695-716, 2004 | 2830 | 2004 |
| Twelve years of SAMtools and BCFtools P Danecek, JK Bonfield, J Liddle, J Marshall, V Ohan, MO Pollard, ... Gigascience 10 (2), giab008, 2021 | 2383 | 2021 |
| 2.2 Mb of contiguous nucleotide sequence from chromosome III of C. elegans R Wilson, R Ainscough, K Anderson, C Baynes, M Berks, J Bonfield, ... Nature 368 (6466), 32-38, 1994 | 1836 | 1994 |
| The staden package, 1998 R Staden, KF Beal, JK Bonfield Bioinformatics methods and protocols, 115-130, 1999 | 1671 | 1999 |
| A new DNA sequence assembly program JK Bonfield, KF Smith, R Staden Nucleic acids research 23 (24), 4992-4999, 1995 | 1166 | 1995 |
| Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B. 1.617. 2) compared with alpha (B. 1.1. 7) variants of concern: a cohort study KA Twohig, T Nyberg, A Zaidi, S Thelwall, MA Sinnathamby, S Aliabadi, ... The Lancet Infectious Diseases 22 (1), 35-42, 2022 | 620 | 2022 |
| Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B. 1.1. 7 B Meng, SA Kemp, G Papa, R Datir, IATM Ferreira, S Marelli, WT Harvey, ... Cell reports 35 (13), 109292, 2021 | 338 | 2021 |
| Changes in symptomatology, reinfection, and transmissibility associated with the SARS-CoV-2 variant B. 1.1. 7: an ecological study MS Graham, CH Sudre, A May, M Antonelli, B Murray, T Varsavsky, ... The Lancet Public Health 6 (5), e335-e345, 2021 | 304 | 2021 |
| Compression of FASTQ and SAM format sequencing data JK Bonfield, MV Mahoney PloS one 8 (3), e59190, 2013 | 220 | 2013 |
| Gap5—editing the billion fragment sequence assembly JK Bonfield, A Whitwham Bioinformatics 26 (14), 1699-1703, 2010 | 205 | 2010 |
| Analyzing sequences using the Staden package and EMBOSS R Staden, DP Judge, JK Bonfield Introduction to bioinformatics: a theoretical and practical approach, 393-410, 2003 | 199* | 2003 |
| A genome-wide, end-sequenced 129Sv BAC library resource for targeting vector construction DJ Adams, MA Quail, T Cox, L Van Der Weyden, BD Gorick, Q Su, ... Genomics 86 (6), 753-758, 2005 | 162 | 2005 |
| De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms F Giordano, L Aigrain, MA Quail, P Coupland, JK Bonfield, RM Davies, ... Scientific reports 7 (1), 1-10, 2017 | 155 | 2017 |
| Petabyte-scale innovations at the European Nucleotide Archive G Cochrane, R Akhtar, J Bonfield, L Bower, F Demiralp, N Faruque, ... Nucleic acids research 37 (suppl_1), D19-D25, 2009 | 127 | 2009 |
| HTSlib: C library for reading/writing high-throughput sequencing data JK Bonfield, J Marshall, P Danecek, H Li, V Ohan, A Whitwham, T Keane, ... Gigascience 10 (2), giab007, 2021 | 114 | 2021 |
| Experiment files and their application during large-scale sequencing projects JK Bonfield, R Staden DNA sequence 6 (2), 109-117, 1996 | 109 | 1996 |
| Automated detection of point mutations using fluorescent sequence trace subtraction JK Bonfield, C Rada, R Staden Nucleic acids research 26 (14), 3404-3409, 1998 | 108 | 1998 |
| Comparison of high-throughput sequencing data compression tools I Numanagić, JK Bonfield, F Hach, J Voges, J Ostermann, C Alberti, ... nature methods 13 (12), 1005-1008, 2016 | 107 | 2016 |
| Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags SJ Hubbard, DV Grafham, KJ Beattie, IM Overton, SR McLaren, ... Genome research 15 (1), 174-183, 2005 | 101 | 2005 |
