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Thomas Zichner
Thomas Zichner
Distinguished Scientist, Boehringer Ingelheim RCV, Austria
Verified email at embl.de
Title
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Cited by
Year
An integrated map of structural variation in 2,504 human genomes
PH Sudmant, T Rausch, EJ Gardner, RE Handsaker, A Abyzov, ...
Nature 526 (7571), 75-81, 2015
19422015
DELLY: structural variant discovery by integrated paired-end and split-read analysis
T Rausch, T Zichner, A Schlattl, AM Stütz, V Benes, JO Korbel
Bioinformatics 28 (18), i333-i339, 2012
15932012
Dissecting the genomic complexity underlying medulloblastoma
DTW Jones, N Jäger, M Kool, T Zichner, B Hutter, M Sultan, YJ Cho, ...
Nature 488 (7409), 100-105, 2012
8712012
Subgroup-specific structural variation across 1,000 medulloblastoma genomes
PA Northcott, DJH Shih, J Peacock, L Garzia, A Sorana Morrissy, ...
Nature 488 (7409), 49-56, 2012
8382012
Genome Sequencing of Pediatric Medulloblastoma Links Catastrophic DNA Rearrangements with TP53 Mutations
T Rausch, DTW Jones, M Zapatka, AM Stütz, T Zichner, J Weischenfeldt, ...
Cell 148 (1), 59-71, 2012
8142012
The whole-genome landscape of medulloblastoma subtypes
PA Northcott, I Buchhalter, AS Morrissy, V Hovestadt, J Weischenfeldt, ...
Nature 547 (7663), 311-317, 2017
7202017
Recurrent somatic alterations of FGFR1 and NTRK2 in pilocytic astrocytoma
DTW Jones, B Hutter, N Jäger, A Korshunov, M Kool, HJ Warnatz, ...
Nature genetics 45 (8), 927-932, 2013
7142013
Epigenomic alterations define lethal CIMP-positive ependymomas of infancy
SC Mack, H Witt, RM Piro, L Gu, S Zuyderduyn, AM Stütz, X Wang, ...
Nature 506 (7489), 445-450, 2014
5752014
Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines
W Huang, A Massouras, Y Inoue, J Peiffer, M Ràmia, AM Tarone, ...
Genome research 24 (7), 1193-1208, 2014
5552014
Enhancer hijacking activates GFI1 family oncogenes in medulloblastoma
PA Northcott, C Lee, T Zichner, AM Stütz, S Erkek, D Kawauchi, DJH Shih, ...
Nature 511 (7510), 428-434, 2014
5512014
The genomic and transcriptomic landscape of a HeLa cell line
JJM Landry, PT Pyl, T Rausch, T Zichner, MM Tekkedil, AM Stütz, A Jauch, ...
G3: Genes, Genomes, Genetics 3 (8), 1213-1224, 2013
5212013
Integrative genomic analyses reveal an androgen-driven somatic alteration landscape in early-onset prostate cancer
J Weischenfeldt, R Simon, L Feuerbach, K Schlangen, D Weichenhan, ...
Cancer cell 23 (2), 159-170, 2013
3732013
Pan-cancer analysis of somatic copy-number alterations implicates IRS4 and IGF2 in enhancer hijacking
J Weischenfeldt, T Dubash, AP Drainas, BR Mardin, Y Chen, AM Stütz, ...
Nature genetics 49 (1), 65-74, 2017
2972017
Spectrum and prevalence of genetic predisposition in medulloblastoma: a retrospective genetic study and prospective validation in a clinical trial cohort
SM Waszak, PA Northcott, I Buchhalter, GW Robinson, C Sutter, ...
The Lancet Oncology 19 (6), 785-798, 2018
2652018
Shadow enhancers are pervasive features of developmental regulatory networks
E Cannavò, P Khoueiry, DA Garfield, P Geeleher, T Zichner, ...
Current Biology 26 (1), 38-51, 2016
1992016
Genomics and drug profiling of fatal TCF3-HLF− positive acute lymphoblastic leukemia identifies recurrent mutation patterns and therapeutic options
U Fischer, M Forster, A Rinaldi, T Risch, S Sungalee, HJ Warnatz, ...
Nature genetics 47 (9), 1020-1029, 2015
1872015
Recurrent MET fusion genes represent a drug target in pediatric glioblastoma
Nature medicine 22 (11), 1314-1320, 2016
1532016
Identifying the unknowns by aligning fragmentation trees
F Rasche, K Scheubert, F Hufsky, T Zichner, M Kai, A Svatoš, S Böcker
Analytical chemistry 84 (7), 3417-3426, 2012
1262012
Algorithm engineering for color-coding with applications to signaling pathway detection
F Hüffner, S Wernicke, T Zichner
Algorithmica 52 (2), 114-132, 2008
942008
Impact of genomic structural variation in Drosophila melanogaster based on population-scale sequencing
T Zichner, DA Garfield, T Rausch, AM Stütz, E Cannavó, M Braun, ...
Genome research 23 (3), 568-579, 2013
792013
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