Pedro T. Monteiro

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Claudine ChaouiyaI2M UMR 7373, Aix Marseille University (France)Dirección de correo verificada de univ-amu.fr
Miguel Cacho TeixeiraAssociate professor with Habilitation, Bioengineering Dept, Instituto Superior Técnico, UniversidadeDirección de correo verificada de tecnico.ulisboa.pt
Isabel Sá-CorreiaDistinguished Professor, Instituto Superior Técnico, Universidade de Lisboa and iBBDirección de correo verificada de tecnico.ulisboa.pt
Ana Teresa FreitasProfessor of Computer Science, INESC-ID, Instituto Superior Técnico, Universidade Técnica de LisboaDirección de correo verificada de inesc-id.pt
Arlindo L OliveiraDistinguished Professor, Instituto Superior Técnico / INESC-IDDirección de correo verificada de tecnico.ulisboa.pt
Denis ThieffryProfessor of Systems Biology, Institut de Biologie de l'Ecole Normale Supérieure (IBENS), ParisDirección de correo verificada de ens.fr
Hidde de JongINRIADirección de correo verificada de inria.fr
Aurélien NaldiInria, FranceDirección de correo verificada de inria.fr
João André CarriçobioMérieux Industry and Researcher, Faculty of Medicine, University of LisbonDirección de correo verificada de fm.ul.pt
Nuno P. MiraAssistant Professor, Instituto Superior TécnicoDirección de correo verificada de ist.utl.pt
Mario RamirezProfessor of Microbiology, Faculdade de Medicina, Universidade de Lisboa, PortugalDirección de correo verificada de fm.ul.pt
Alexandre LemosOutSystems, Instituto superior TécnicoDirección de correo verificada de outsystems.com
Ines LynceINESC-ID, Instituto Superior Técnico (IST), Universidade de LisboaDirección de correo verificada de tecnico.ulisboa.pt
Tomas HelikarSusan J Rosowski Professor, Department of Biochemistry, University of Nebraska - LincolnDirección de correo verificada de unl.edu
Wassim Abou-JaoudéCo-founder at GencoveryDirección de correo verificada de gencovery.com
Delphine RopersInriaDirección de correo verificada de inria.fr
Margarida PalmaInstituto Superior Técnico. Universidade de Lisboa.Dirección de correo verificada de tecnico.ulisboa.pt
Michel PageINRIA Grenoble, FranceDirección de correo verificada de iae-grenoble.fr
Pedro PaisPost-doctoral Researcher, iBB, ISTDirección de correo verificada de tecnico.ulisboa.pt
Julio Saez RodriguezHeidelberg UniversityDirección de correo verificada de uni-heidelberg.de

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Pedro T. Monteiro

INESC-ID / IST - Universidade de Lisboa

Dirección de correo verificada de tecnico.ulisboa.pt - Página principal

Algorithms Computational Biology Formal Verification Biological Networks Discrete event systems


Título Ordenar por citas Ordenar por año Ordenar por título	Citado por Citado por	Año
The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae MC Teixeira, P Monteiro, P Jain, S Tenreiro, AR Fernandes, NP Mira, ... Nucleic acids research 34 (suppl 1), D446-D451, 2006	604	2006
PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods AP Francisco, C Vaz, PT Monteiro, J Melo-Cristino, M Ramirez, JA Carriço BMC bioinformatics 13 (1), 1-10, 2012	543	2012
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae MC Teixeira, PT Monteiro, JF Guerreiro, JP Gonçalves, NP Mira, ... Nucleic acids research 42 (D1), D161-D166, 2014	278	2014
YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface D Abdulrehman, PT Monteiro, MC Teixeira, NP Mira, AB Lourenço, ... Nucleic acids research 39 (suppl 1), D136-D140, 2011	235	2011
Logical modeling and dynamical analysis of cellular networks W Abou-Jaoudé, P Traynard, PT Monteiro, J Saez-Rodriguez, T Helikar, ... Frontiers in genetics 7, 94, 2016	228	2016
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae PT Monteiro, ND Mendes, MC Teixeira, S d’Orey, S Tenreiro, NP Mira, ... Nucleic acids research 36 (suppl 1), D132-D136, 2008	200	2008
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools C Chaouiya, D Bérenguier, SM Keating, A Naldi, MP Van Iersel, ... BMC systems biology 7 (1), 135, 2013	182	2013
SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020	174	2020
YEASTRACT: an upgraded database for the analysis of transcription regulatory networks in Saccharomyces cerevisiae MC Teixeira, PT Monteiro, M Palma, C Costa, CP Godinho, P Pais, ... Nucleic acids research 46 (D1), D348-D353, 2018	174	2018
YEASTRACT+: a portal for cross-species comparative genomics of transcription regulation in yeasts PT Monteiro, J Oliveira, P Pais, M Antunes, M Palma, M Cavalheiro, ... Nucleic Acids Research 48 (D1), D642-D649, 2020	173	2020
Temporal logic patterns for querying dynamic models of cellular interaction networks PT Monteiro, D Ropers, R Mateescu, AT Freitas, H De Jong Bioinformatics 24 (16), i227-i233, 2008	114	2008
Model checking to assess T-helper cell plasticity W Abou-Jaoudé, PT Monteiro, A Naldi, M Grandclaudon, V Soumelis, ... Frontiers in bioengineering and biotechnology 2, 86, 2015	103	2015
Logical modeling and analysis of cellular regulatory networks with ginsim 3.0 A Naldi, C Hernandez, W Abou-Jaoudé, PT Monteiro, C Chaouiya, ... Frontiers in physiology 9, 646, 2018	90	2018
The CoLoMoTo interactive notebook: accessible and reproducible computational analyses for qualitative biological networks A Naldi, C Hernandez, N Levy, G Stoll, PT Monteiro, C Chaouiya, ... Frontiers in physiology 9, 680, 2018	84	2018
Efficient parameter search for qualitative models of regulatory networks using symbolic model checking G Batt, M Page, I Cantone, G Goessler, P Monteiro, H De Jong Bioinformatics 26 (18), i603-i610, 2010	84	2010
Cooperative development of logical modelling standards and tools with CoLoMoTo A Naldi, PT Monteiro, C Müssel, HA Kestler, D Thieffry, I Xenarios, ... Bioinformatics 31 (7), 1154-1159, 2015	83	2015
Dynamical modeling and analysis of large cellular regulatory networks D Bérenguier, C Chaouiya, PT Monteiro, A Naldi, E Remy, D Thieffry, ... Chaos: An Interdisciplinary Journal of Nonlinear Science 23 (2), 025114, 2013	83	2013
The PathoYeastract database: an information system for the analysis of gene and genomic transcription regulation in pathogenic yeasts PT Monteiro, P Pais, C Costa, S Manna, I Sá-Correia, MC Teixeira Nucleic acids research 45 (D1), D597-D603, 2017	44	2017
Genetic Network Analyzer: A Tool for the Qualitative Modeling and Simulation of Bacterial Regulatory Networks G Batt, B Besson, H de Jong, E Dumas, J Geiselmann, R Monte, ... Bacterial Molecular Networks, 439-462, 2012	44	2012
Hybrid Epithelial–Mesenchymal Phenotypes Are Controlled by Microenvironmental Factors G Selvaggio, S Canato, A Pawar, PT Monteiro, PS Guerreiro, MM Brás, ... Cancer Research 80 (11), 2407-2420, 2020	36	2020

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