Miten Jain
Miten Jain
Assistant Professor, Northeastern University
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Nanopore sequencing and assembly of a human genome with ultra-long reads
M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ...
Nature biotechnology 36 (4), 338-345, 2018
The complete sequence of a human genome
S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ...
Science 376 (6588), 44-53, 2022
The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community
M Jain, HE Olsen, B Paten, M Akeson
Genome biology 17, 1-11, 2016
Improved data analysis for the MinION nanopore sequencer
M Jain, IT Fiddes, KH Miga, HE Olsen, B Paten, M Akeson
Nature methods 12 (4), 351-356, 2015
Nanopore native RNA sequencing of a human poly (A) transcriptome (vol 16, pg, 1297, 2019)
RE Workman, AD Tang, PS Tang, M Jain, JR Tyson, R Razaghi, ...
NATURE METHODS 17 (1), 114-114, 2020
Mapping DNA methylation with high-throughput nanopore sequencing
AC Rand, M Jain, JM Eizenga, A Musselman-Brown, HE Olsen, M Akeson, ...
Nature methods 14 (4), 411-413, 2017
Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes
K Shafin, T Pesout, R Lorig-Roach, M Haukness, HE Olsen, C Bosworth, ...
Nature biotechnology 38 (9), 1044-1053, 2020
Nanopore long-read RNAseq reveals widespread transcriptional variation among the surface receptors of individual B cells
A Byrne, AE Beaudin, HE Olsen, M Jain, C Cole, T Palmer, RM DuBois, ...
Nature communications 8 (1), 16027, 2017
MinION Analysis and Reference Consortium: Phase 1 data release and analysis
CLC Ip, M Loose, JR Tyson, M de Cesare, BL Brown, M Jain, RM Leggett, ...
F1000Research 4, 2015
A draft human pangenome reference
WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ...
Nature 617 (7960), 312-324, 2023
Cancer vaccines and carbohydrate epitopes
J Heimburg-Molinaro, M Lum, G Vijay, M Jain, A Almogren, ...
Vaccine 29 (48), 8802-8826, 2011
Linear assembly of a human centromere on the Y chromosome
M Jain, HE Olsen, DJ Turner, D Stoddart, KV Bulazel, B Paten, D Haussler, ...
Nature biotechnology 36 (4), 321, 2018
Centromere reference models for human chromosomes X and Y satellite arrays
KH Miga, Y Newton, M Jain, N Altemose, HF Willard, WJ Kent
Genome research 24 (4), 697-707, 2014
Mendelian randomization
E Birney
Cold Spring Harbor perspectives in medicine, a041302, 2021
MinION-based long-read sequencing and assembly extends the Caenorhabditis elegans reference genome
JR Tyson, NJ O'Neil, M Jain, HE Olsen, P Hieter, TP Snutch
Genome research 28 (2), 266-274, 2018
Epigenetic patterns in a complete human genome
A Gershman, MEG Sauria, X Guitart, MR Vollger, PW Hook, SJ Hoyt, ...
Science 376 (6588), eabj5089, 2022
Reading canonical and modified nucleobases in 16S ribosomal RNA using nanopore native RNA sequencing
AM Smith, M Jain, L Mulroney, DR Garalde, M Akeson
PloS one 14 (5), e0216709, 2019
Ultrarapid nanopore genome sequencing in a critical care setting
JE Gorzynski, SD Goenka, K Shafin, TD Jensen, DG Fisk, ME Grove, ...
New England Journal of Medicine 386 (7), 700-702, 2022
Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads
K Shafin, T Pesout, PC Chang, M Nattestad, A Kolesnikov, S Goel, G Baid, ...
Nature methods 18 (11), 1322-1332, 2021
MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9. 0 chemistry
M Jain, JR Tyson, M Loose, CLC Ip, DA Eccles, J O'Grady, S Malla, ...
F1000Research 6, 2017
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