| Exploiting synthetic lethality for the therapy of ABC diffuse large B cell lymphoma Y Yang, AL Shaffer, NC Emre, M Ceribelli, M Zhang, G Wright, W Xiao, ... Cancer Cell 21 (6), 723–737, 2012 | 584 | 2012 |
| Understanding tissue-specific gene regulation AR Sonawane, J Platig, M Fagny, CY Chen, JN Paulson, ... Cell reports 21 (4), 1077-1088, 2017 | 366 | 2017 |
| Sex differences in gene expression and regulatory networks across 29 human tissues CM Lopes-Ramos, CY Chen, ML Kuijjer, JN Paulson, AR Sonawane, ... Cell reports 31 (12), 2020 | 232 | 2020 |
| Exploring regulation in tissues with eQTL networks M Fagny, JN Paulson, ML Kuijjer, AR Sonawane, CY Chen, ... Proceedings of the National Academy of Sciences 114 (37), E7841-E7850, 2017 | 96 | 2017 |
| External periodic driving of large systems of globally coupled phase oscillators TM Antonsen, RT Faghih, M Girvan, E Ott, J Platig Chaos: An Interdisciplinary Journal of Nonlinear Science 18 (3), 2008 | 96 | 2008 |
| Bipartite community structure of eQTLs J Platig, PJ Castaldi, D DeMeo, J Quackenbush PLoS computational biology 12 (9), e1005033, 2016 | 62 | 2016 |
| Multisystem Analysis of Mycobacterium tuberculosis Reveals Kinase-Dependent Remodeling of the Pathogen-Environment Interface X Carette, J Platig, DC Young, M Helmel, AT Young, Z Wang, LP Potluri, ... MBio 9 (2), 10.1128/mbio. 02333-17, 2018 | 54 | 2018 |
| Regulatory network changes between cell lines and their tissues of origin CM Lopes-Ramos, JN Paulson, CY Chen, ML Kuijjer, M Fagny, J Platig, ... BMC genomics 18, 1-13, 2017 | 54 | 2017 |
| Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data JN Paulson, CY Chen, CM Lopes-Ramos, ML Kuijjer, J Platig, ... BMC bioinformatics 18, 1-10, 2017 | 51 | 2017 |
| Thermodynamic measures of cancer: Gibbs free energy and entropy of protein–protein interactions EA Rietman, J Platig, JA Tuszynski, G Lakka Klement Journal of biological physics 42, 339-350, 2016 | 45 | 2016 |
| GRAND: a database of gene regulatory network models across human conditions M Ben Guebila, CM Lopes-Ramos, D Weighill, AR Sonawane, R Burkholz, ... Nucleic Acids Research 50 (D1), D610-D621, 2022 | 42 | 2022 |
| Protein kinases PknA and PknB independently and coordinately regulate essential Mycobacterium tuberculosis physiologies and antimicrobial susceptibility J Zeng, J Platig, TY Cheng, S Ahmed, Y Skaf, LP Potluri, D Schwartz, ... PLoS Pathogens 16 (4), e1008452, 2020 | 38 | 2020 |
| Robustness of network measures to link errors J Platig, E Ott, M Girvan Physical Review E 88 (6), 062812, 2013 | 37 | 2013 |
| Nongenic cancer-risk SNPs affect oncogenes, tumour-suppressor genes, and immune function M Fagny, J Platig, ML Kuijjer, X Lin, J Quackenbush British journal of cancer 122 (4), 569-577, 2020 | 36 | 2020 |
| Echo phenomena in large systems of coupled oscillators E Ott, JH Platig, TM Antonsen, M Girvan Chaos: An Interdisciplinary Journal of Nonlinear Science 18 (3), 2008 | 33 | 2008 |
| Identification of an emphysema-associated genetic variant near TGFB2 with regulatory effects in lung fibroblasts MM Parker, Y Hao, F Guo, B Pham, R Chase, J Platig, MH Cho, CP Hersh, ... Elife 8, e42720, 2019 | 27 | 2019 |
| Ensemble genomic analysis in human lung tissue identifies novel genes for chronic obstructive pulmonary disease JD Morrow, MH Cho, J Platig, X Zhou, DL DeMeo, W Qiu, B Celli, ... Human genomics 12, 1-12, 2018 | 27 | 2018 |
| Sexual dimorphism in gene expression and regulatory networks across human tissues CY Chen, C Lopes-Ramos, ML Kuijjer, JN Paulson, AR Sonawane, ... BioRxiv, 082289, 2016 | 26 | 2016 |
| Gene regulatory network inference as relaxed graph matching D Weighill, MB Guebila, C Lopes-Ramos, K Glass, J Quackenbush, ... Proceedings of the AAAI Conference on Artificial Intelligence 35 (11), 10263 …, 2021 | 16 | 2021 |
| Histopathological image QTL discovery of immune infiltration variants JD Barry, M Fagny, JN Paulson, HJWL Aerts, J Platig, J Quackenbush Iscience 5, 80-89, 2018 | 16* | 2018 |
