| Proteome-wide covalent ligand discovery in native biological systems KM Backus, BE Correia, KM Lum, S Forli, BD Horning, GE González-Páez, ... Nature 534 (7608), 570-574, 2016 | 596 | 2016 |
| Proof of principle for epitope-focused vaccine design BE Correia, JT Bates, RJ Loomis, G Baneyx, C Carrico, JG Jardine, ... Nature 507 (7491), 201-206, 2014 | 508 | 2014 |
| Deciphering interaction fingerprints from protein molecular surfaces using geometric deep learning P Gainza, F Sverrisson, F Monti, E Rodola, D Boscaini, MM Bronstein, ... Nature Methods 17 (2), 184-192, 2020 | 379 | 2020 |
| Macromolecular modeling and design in Rosetta: recent methods and frameworks JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ... Nature methods 17 (7), 665-680, 2020 | 376 | 2020 |
| Ligand and target discovery by fragment-based screening in human cells CG Parker, A Galmozzi, Y Wang, BE Correia, K Sasaki, CM Joslyn, ... Cell 168 (3), 527-541. e29, 2017 | 337 | 2017 |
| Global profiling of lysine reactivity and ligandability in the human proteome SM Hacker, KM Backus, MR Lazear, S Forli, BE Correia, BF Cravatt Nature chemistry 9 (12), 1181-1190, 2017 | 311 | 2017 |
| Solution structure of a minor and transiently formed state of a T4 lysozyme mutant G Bouvignies, P Vallurupalli, DF Hansen, BE Correia, O Lange, A Bah, ... Nature 477 (7362), 111-114, 2011 | 282 | 2011 |
| Computational design of epitope-scaffolds allows induction of antibodies specific for a poorly immunogenic HIV vaccine epitope BE Correia, YEA Ban, MA Holmes, H Xu, K Ellingson, Z Kraft, C Carrico, ... Structure 18 (9), 1116-1126, 2010 | 251 | 2010 |
| Computation-guided backbone grafting of a discontinuous motif onto a protein scaffold ML Azoitei, BE Correia, YEA Ban, C Carrico, O Kalyuzhniy, L Chen, ... Science 334 (6054), 373-376, 2011 | 238 | 2011 |
| A global map of lipid-binding proteins and their ligandability in cells MJ Niphakis, KM Lum, AB Cognetta, BE Correia, TA Ichu, J Olucha, ... Cell 161 (7), 1668-1680, 2015 | 200 | 2015 |
| Engineered anti-CRISPR proteins for optogenetic control of CRISPR–Cas9 F Bubeck, MD Hoffmann, Z Harteveld, S Aschenbrenner, A Bietz, ... Nature methods 15 (11), 924-927, 2018 | 167 | 2018 |
| A computationally designed inhibitor of an Epstein-Barr viral Bcl-2 protein induces apoptosis in infected cells E Procko, GY Berguig, BW Shen, Y Song, S Frayo, AJ Convertine, ... Cell 157 (7), 1644-1656, 2014 | 130 | 2014 |
| De novo protein design enables the precise induction of RSV-neutralizing antibodies F Sesterhenn, C Yang, J Bonet, JT Cramer, X Wen, Y Wang, CI Chiang, ... Science 368 (6492), eaay5051, 2020 | 120 | 2020 |
| Design and characterization of epitope-scaffold immunogens that present the motavizumab epitope from respiratory syncytial virus JS McLellan, BE Correia, M Chen, Y Yang, BS Graham, WR Schief, ... Journal of molecular biology 409 (5), 853-866, 2011 | 115 | 2011 |
| Mapping the protein interaction landscape for fully functionalized small-molecule probes in human cells T Kambe, BE Correia, MJ Niphakis, BF Cravatt Journal of the American Chemical Society 136 (30), 10777-10782, 2014 | 101 | 2014 |
| Optimization of therapeutic antibodies by predicting antigen specificity from antibody sequence via deep learning DM Mason, S Friedensohn, CR Weber, C Jordi, B Wagner, SM Meng, ... Nature Biomedical Engineering 5 (6), 600-612, 2021 | 99 | 2021 |
| Scaffolding protein functional sites using deep learning J Wang, S Lisanza, D Juergens, D Tischer, JL Watson, KM Castro, ... Science 377 (6604), 387-394, 2022 | 88 | 2022 |
| A computationally designed chimeric antigen receptor provides a small-molecule safety switch for T-cell therapy G Giordano-Attianese, P Gainza, E Gray-Gaillard, E Cribioli, S Shui, S Kim, ... Nature biotechnology 38 (4), 426-432, 2020 | 88 | 2020 |
| Computational protein design using flexible backbone remodeling and resurfacing: case studies in structure-based antigen design BE Correia, YEA Ban, DJ Friend, K Ellingson, H Xu, E Boni, ... Journal of molecular biology 405 (1), 284-297, 2011 | 75 | 2011 |
| Chemoproteomic profiling and discovery of protein electrophiles in human cells ML Matthews, L He, BD Horning, EJ Olson, BE Correia, JR Yates III, ... Nature chemistry 9 (3), 234-243, 2017 | 74 | 2017 |
