Benedict Paten

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David HausslerScientific Director, UC Santa Cruz Genomics Institute, University of California, Santa CruzDirección de correo verificada de soe.ucsc.edu
Miten JainAssistant Professor, Northeastern UniversityDirección de correo verificada de northeastern.edu
Jordan M EizengaPostdoctoral Researcher, Genomics Institute, University of California Santa CruzDirección de correo verificada de ucsc.edu
Mark DiekhansUniversity of California, Santa Cruz; UC Santa Cruz Genomics InstituteDirección de correo verificada de soe.ucsc.edu
Karen H MigaAssistant Professor; Associate Director, UC Santa Cruz Genomics Institute, University of CaliforniaDirección de correo verificada de ucsc.edu
Mark AkesonProfessor of Biomolecular Engineering, UC Santa CruzDirección de correo verificada de soe.ucsc.edu
Ian Fiddes10x GenomicsDirección de correo verificada de 10xgenomics.com
Ewan BirneyDirector, EMBL-EBIDirección de correo verificada de ebi.ac.uk
Daniel ZerbinoMosaic TherapeuticsDirección de correo verificada de mosaic-tx.com
Dent EarlStaff Software Engineer at Google. Formerly of UCSC, UCLA.Dirección de correo verificada de soe.ucsc.edu
Ngan NguyenAtreca Inc.Dirección de correo verificada de atreca.com
W James KentUC Santa Cruz Genomics Institute, University of California Santa Cruz, UCSC Genome BrowserDirección de correo verificada de soe.ucsc.edu
Ian HolmesProfessor, Computational Biology and Bioengineering, UC BerkeleyDirección de correo verificada de berkeley.edu
Paul FlicekThe Jackson Laboratory, University of CambridgeDirección de correo verificada de jax.org
laurence ettwiller, Ph.DNew England Biolabs, INCDirección de correo verificada de neb.com
John St. JohnMachine Learning Scientist @ NvidiaDirección de correo verificada de nvidia.com

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Benedict Paten

Professor; Associate Director, UC Santa Cruz Genomics Institute, University of California

Dirección de correo verificada de ucsc.edu - Página principal

computational genomics sequence analysis genome comparison human variation cancer genomics


Título Ordenar por citas Ordenar por año Ordenar por título	Citado por Citado por	Año
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ... nature 447 (7146), 799-816, 2007	6050	2007
Genetic effects on gene expression across human tissues GT Consortium, DA Laboratory Nature 550 (7675), 204-213, 2017	3371*	2017
GENCODE reference annotation for the human and mouse genomes A Frankish, M Diekhans, AM Ferreira, R Johnson, I Jungreis, J Loveland, ... Nucleic acids research 47 (D1), D766-D773, 2019	2683	2019
The complete sequence of a human genome S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ... Science 376 (6588), 44-53, 2022	2020	2022
Nanopore sequencing and assembly of a human genome with ultra-long reads M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ... Nature biotechnology 36 (4), 338-345, 2018	1904	2018
The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community M Jain, HE Olsen, B Paten, M Akeson Genome biology 17, 1-11, 2016	1654	2016
Towards complete and error-free genome assemblies of all vertebrate species A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ... Nature 592 (7856), 737-746, 2021	1616	2021
Expanded encyclopaedias of DNA elements in the human and mouse genomes JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ... Nature 583 (7818), 699-710, 2020	1284	2020
The UCSC genome browser database: 2015 update KR Rosenbloom, J Armstrong, GP Barber, J Casper, H Clawson, ... Nucleic acids research 43 (D1), D670-D681, 2015	1083	2015
Toil enables reproducible, open source, big biomedical data analyses J Vivian, AA Rao, FA Nothaft, C Ketchum, J Armstrong, A Novak, J Pfeil, ... Nature biotechnology 35 (4), 314-316, 2017	1059	2017
A user’s guide to the encyclopedia of DNA elements (ENCODE) ENCODE Project Consortium PLoS Biol 9 (4), e1001046, 2011	855	2011
GENCODE 2021 A Frankish, M Diekhans, I Jungreis, J Lagarde, JE Loveland, JM Mudge, ... Nucleic acids research 49 (D1), D916-D923, 2021	834	2021
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ... Gigascience 2 (1), 2047-217X-2-10, 2013	801	2013
Improved data analysis for the MinION nanopore sequencer M Jain, IT Fiddes, KH Miga, HE Olsen, B Paten, M Akeson Nature methods 12 (4), 351-356, 2015	788	2015
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures A Stark, MF Lin, P Kheradpour, JS Pedersen, L Parts, JW Carlson, ... Nature 450 (7167), 219-232, 2007	717	2007
Telomere-to-telomere assembly of a complete human X chromosome KH Miga, S Koren, A Rhie, MR Vollger, A Gershman, A Bzikadze, ... Nature 585 (7823), 79-84, 2020	705	2020
A user's guide to the encyclopedia of DNA elements (ENCODE) RM Myers, J Stamatoyannopoulos, M Snyder, I Dunham, RC Hardison, ... PLoS biology 9 (4), 2011	676	2011
Assemblathon 1: a competitive assessment of de novo short read assembly methods D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ... Genome research 21 (12), 2224-2241, 2011	633	2011
Nanopore native RNA sequencing of a human poly (A) transcriptome (vol 16, pg, 1297, 2019) RE Workman, AD Tang, PS Tang, M Jain, JR Tyson, R Razaghi, ... NATURE METHODS 17 (1), 114-114, 2020	583*	2020
Variation graph toolkit improves read mapping by representing genetic variation in the reference E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ... Nature biotechnology 36 (9), 875-879, 2018	571	2018

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