| Cutaneous leishmaniasis: the complexity of host’s effective immune response against a polymorphic parasitic disease Á Gabriel, A Valério-Bolas, J Palma-Marques, P Mourata-Gonçalves, ... Journal of immunology research 2019, 2019 | 71 | 2019 |
| PPR-SSM: personalized PageRank and semantic similarity measures for entity linking A Lamurias, P Ruas, FM Couto BMC bioinformatics 20, 1-12, 2019 | 20 | 2019 |
| An extended overview of the CLEF 2020 ChEMU lab: information extraction of chemical reactions from patents J He, DQ Nguyen, SA Akhondi, C Druckenbrodt, C Thorne, R Hoessel, ... Proceedings of the CLEF 2020 conference, 2020 | 19 | 2020 |
| Linking chemical and disease entities to ontologies by integrating PageRank with extracted relations from literature P Ruas, A Lamurias, FM Couto Journal of Cheminformatics 12 (1), 1-11, 2020 | 17 | 2020 |
| NILINKER: Attention-based approach to NIL Entity Linking P Ruas, FM Couto Journal of Biomedical Informatics 132, 104137, 2022 | 16 | 2022 |
| LasigeBioTM at CANTEMIST: Named Entity Recognition and Normalization of Tumour Morphology Entities and Clinical Coding of Spanish Health-related Documents. P Ruas, A Neves, VDT Andrade, FM Couto, ME Aragón IberLEF@ SEPLN, 422-437, 2020 | 10 | 2020 |
| Lasige-BioTM at ProfNER: BiLSTM-CRF and contextual Spanish embeddings for Named Entity Recognition and Tweet Binary Classification P Ruas, V Andrade, FM Couto Proceedings of the Sixth Social Media Mining for Health (# SMM4H) Workshop …, 2021 | 6 | 2021 |
| LasigeBioTM Team at CLEF2020 ChEMU Evaluation Lab: Named Entity Recognition and Event extraction from chemical reactions described in patents using BioBERT NER and RE. P Ruas, A Lamurias, FM Couto CLEF (Working Notes), 2020 | 6 | 2020 |
| COVID-19 recommender system based on an annotated multilingual corpus M Barros, P Ruas, D Sousa, AH Bangash, FM Couto Genomics & Informatics 19 (3), 2021 | 4 | 2021 |
| LASIGE-BioTM at MESINESP2: entity linking with semantic similarity and extreme multi-label classification on Spanish biomedical documents. P Ruas, VDT Andrade, FM Couto CLEF (Working Notes), 324-334, 2021 | 4 | 2021 |
| COVID-19: a semantic-based pipeline for recommending biomedical entities MA Barros, A Lamurias, D Sousa, P Ruas, FM Couto Proceedings of the 1st Workshop on NLP for COVID-19 (Part 2) at EMNLP 2020, 2020 | 3 | 2020 |
| LASIGE and UNICAGE solution to the NASA LitCoin NLP Competition P Ruas, DF Sousa, A Neves, C Cruz, FM Couto arXiv preprint arXiv:2308.05609, 2023 | 2 | 2023 |
| Named entity recognition and linking: A Portuguese and Spanish oncological parallel corpus VDT Andrade, P Ruas, FM Couto bioRxiv, 2021.09. 16.460605, 2021 | 2 | 2021 |
| Creating Recommender Systems Datasets in Scientific Fields M Barros, FM Couto, M Pato, P Ruas Proceedings of the 27th ACM SIGKDD Conference on Knowledge Discovery & Data …, 2021 | 1 | 2021 |
| Hybrid X-Linker: Automated Data Generation and Extreme Multi-label Ranking for Biomedical Entity Linking P Ruas, F Gallego, FJ Veredas, FM Couto arXiv preprint arXiv:2407.06292, 2024 | | 2024 |
| Deep Semantic Entity Linking P Ruas | | 2021 |
| An extended overview of the CLEF 2020 ChEMU Lab J He, DQ Nguyen, SA Akhondi, C Druckenbrodt, C Thorne, R Hoessel, ... Proceedings of the CLEF 2020 conference, 2020 | | 2020 |
| Exploring biomedical ontologies, personalized pagerank and semantic similarity in the entity linking task PS Ruas | | 2019 |
