Seguir
Trevor Pesout
Trevor Pesout
UC Santa Cruz Genomics Institute
Dirección de correo verificada de ucsc.edu
Título
Citado por
Citado por
Año
Towards complete and error-free genome assemblies of all vertebrate species
A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ...
Nature 592 (7856), 737-746, 2021
12052021
Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes
K Shafin, T Pesout, R Lorig-Roach, M Haukness, HE Olsen, C Bosworth, ...
Nature biotechnology 38 (9), 1044-1053, 2020
3622020
A draft human pangenome reference
WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ...
Nature 617 (7960), 312-324, 2023
2322023
Ultrarapid nanopore genome sequencing in a critical care setting
JE Gorzynski, SD Goenka, K Shafin, TD Jensen, DG Fisk, ME Grove, ...
New England Journal of Medicine 386 (7), 700-702, 2022
1402022
Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads
K Shafin, T Pesout, PC Chang, M Nattestad, A Kolesnikov, S Goel, G Baid, ...
Nature methods 18 (11), 1322-1332, 2021
1322021
PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions
ND Olson, J Wagner, J McDaniel, SH Stephens, ST Westreich, ...
Cell Genomics 2 (5), 2022
1062022
Semi-automated assembly of high-quality diploid human reference genomes
ED Jarvis, G Formenti, A Rhie, A Guarracino, C Yang, J Wood, A Tracey, ...
Nature 611 (7936), 519-531, 2022
922022
Haplotype-aware diplotyping from noisy long reads
J Ebler, M Haukness, T Pesout, T Marschall, B Paten
Genome biology 20, 1-16, 2019
502019
Efficient de novo assembly of eleven human genomes using PromethION sequencing and a novel nanopore toolkit
K Shafin, T Pesout, R Lorig-Roach, M Haukness, HE Olsen, C Bosworth, ...
BioRxiv, 715722, 2019
45*2019
Accelerated identification of disease-causing variants with ultra-rapid nanopore genome sequencing
SD Goenka, JE Gorzynski, K Shafin, DG Fisk, T Pesout, TD Jensen, ...
Nature Biotechnology 40 (7), 1035-1041, 2022
412022
Haplotype-aware variant calling enables high accuracy in nanopore long-reads using deep neural networks
K Shafin, T Pesout, PC Chang, M Nattestad, A Kolesnikov, S Goel, G Baid, ...
BioRxiv, 2021.03. 04.433952, 2021
312021
Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation
M Kolmogorov, KJ Billingsley, M Mastoras, M Meredith, J Monlong, ...
Nature Methods 20 (10), 1483-1492, 2023
172023
Gaps and complex structurally variant loci in phased genome assemblies
D Porubsky, MR Vollger, WT Harvey, AN Rozanski, P Ebert, G Hickey, ...
Genome Research 33 (4), 496-510, 2023
162023
Haplotype-aware genotyping from noisy long reads
J Ebler, M Haukness, T Pesout, T Marschall, B Paten
bioRxiv, 293944, 2018
92018
Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome
HJ Lee, SU Greer, DS Pavlichin, B Zhou, AE Urban, T Weissman, ...
Cell Reports Methods 3 (8), 2023
22023
Ultra-Rapid Nanopore Whole Genome Genetic Diagnosis of Dilated Cardiomyopathy in an Adolescent With Cardiogenic Shock
JE Gorzynski, SD Goenka, K Shafin, TD Jensen, DG Fisk, ME Grove, ...
Circulation: Genomic and Precision Medicine 15 (2), e003591, 2022
12022
Methodological Advancements for Genome Reconstruction by Haplotyping Long Read Sequence Data
TW Pesout
University of California, Santa Cruz, 2022
2022
Better Data for Better Health
SD Goenka, JE Gorzynski, K Shafin, DG Fisk, T Pesout, TD Jensen, ...
Haplotype-aware genotyping from noisy long reads-Supplementary material
J Ebler, M Haukness, T Pesout, T Marschall, B Paten
El sistema no puede realizar la operación en estos momentos. Inténtalo de nuevo más tarde.
Artículos 1–19