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Mark Hallen
Mark Hallen
Verified email at duke.edu
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Year
Crystal structure, conformational fixation and entry-related interactions of mature ligand-free HIV-1 Env
Y Do Kwon, M Pancera, P Acharya, IS Georgiev, ET Crooks, J Gorman, ...
Nature structural & molecular biology 22 (7), 522-531, 2015
3652015
Dead‐end elimination with perturbations (DEEPer): A provable protein design algorithm with continuous sidechain and backbone flexibility
MA Hallen, DA Keedy, BR Donald
Proteins: Structure, Function, and Bioinformatics 81 (1), 18-39, 2013
1062013
OSPREY 3.0: Open‐source protein redesign for you, with powerful new features
MA Hallen, JW Martin, A Ojewole, JD Jou, AU Lowegard, MS Frenkel, ...
Journal of computational chemistry 39 (30), 2494-2507, 2018
672018
Mass spectrometry-and lysine amidination-based protocol for thermodynamic analysis of protein folding and ligand binding interactions
Y Xu, IN Falk, MA Hallen, MC Fitzgerald
Analytical chemistry 83 (9), 3555-3562, 2011
392011
Fluorescence recovery kinetic analysis of γ-tubulin binding to the mitotic spindle
MA Hallen, J Ho, CD Yankel, SA Endow
Biophysical Journal 95 (6), 3048-3058, 2008
362008
Ncd motor binding and transport in the spindle
MA Hallen, ZY Liang, SA Endow
Journal of cell science 121 (22), 3834-3841, 2008
312008
comets (Constrained Optimization of Multistate Energies by Tree Search): A Provable and Efficient Protein Design Algorithm to Optimize Binding Affinity and …
MA Hallen, BR Donald
Journal of Computational Biology 23 (5), 311-321, 2016
272016
A microtubule-destabilizing kinesin motor regulates spindle length and anchoring in oocytes
J Zou, MA Hallen, CD Yankel, SA Endow
The Journal of Cell Biology 180 (3), 459-466, 2008
252008
Compact representation of continuous energy surfaces for more efficient protein design
MA Hallen, P Gainza, BR Donald
Journal of chemical theory and computation 11 (5), 2292-2306, 2015
242015
LUTE (Local Unpruned Tuple Expansion): Accurate continuously flexible protein design with general energy functions and rigid-rotamer-like efficiency
MA Hallen, JD Jou, BR Donald
Biophysical Journal 112 (3), 194a, 2017
232017
Protein design by provable algorithms
MA Hallen, BR Donald
Communications of the ACM 62 (10), 76-84, 2019
222019
Mature Drosophila meiosis I spindles comprise microtubules of mixed polarity
ZY Liang, MA Hallen, SA Endow
Current Biology 19 (2), 163-168, 2009
202009
CATS (Coordinates of Atoms by Taylor Series): protein design with backbone flexibility in all locally feasible directions
MA Hallen, BR Donald
Bioinformatics 33 (14), i5-i12, 2017
192017
Fast gap‐free enumeration of conformations and sequences for protein design
KE Roberts, P Gainza, MA Hallen, BR Donald
Proteins: Structure, Function, and Bioinformatics 83 (10), 1859-1877, 2015
192015
Computation of steady-state probability distributions in stochastic models of cellular networks
M Hallen, B Li, Y Tanouchi, C Tan, M West, L You
PLoS Computational Biology 7 (10), e1002209, 2011
192011
Two-state displacement by the kinesin-14 Ncd stalk
MA Hallen, ZY Liang, SA Endow
Biophysical chemistry 154 (2-3), 56-65, 2011
182011
Expanding the scope of quantitative FRAP analysis
MA Hallen, AT Layton
Journal of Theoretical Biology 262 (2), 295-305, 2010
152010
Anastral spindle assembly and γ-tubulin in Drosophila oocytes
SA Endow, MA Hallen
BMC cell biology 12, 1-11, 2011
142011
Synthesis of carboxylic acid monolayers by ozonolysis of 10-undecenyltrichlorosilane SAMs
MA Hallen, HD Hallen
The Journal of Physical Chemistry C 112 (6), 2086-2090, 2008
142008
Anastral spindle assembly: a mathematical model
MA Hallen, SA Endow
Biophysical Journal 97 (8), 2191-2201, 2009
132009
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