| Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development S Bonn, RP Zinzen, C Girardot, EH Gustafson, A Perez-Gonzalez, ... Nature genetics 44 (2), 148-156, 2012 | 606 | 2012 |
| Combinatorial binding predicts spatio-temporal cis-regulatory activity RP Zinzen, C Girardot, J Gagneur, M Braun, EEM Furlong Nature 462 (7269), 65-70, 2009 | 476 | 2009 |
| A core transcriptional network for early mesoderm development in Drosophila melanogaster T Sandmann, C Girardot, M Brehme, W Tongprasit, V Stolc, EEM Furlong Genes & development 21 (4), 436-449, 2007 | 359 | 2007 |
| A transcription factor collective defines cardiac cell fate and reflects lineage history G Junion, M Spivakov, C Girardot, M Braun, EH Gustafson, E Birney, ... Cell 148 (3), 473-486, 2012 | 308 | 2012 |
| Dynamic regulation by polycomb group protein complexes controls pattern formation and the cell cycle in Drosophila K Oktaba, L Gutiérrez, J Gagneur, C Girardot, AK Sengupta, EEM Furlong, ... Developmental cell 15 (6), 877-889, 2008 | 241 | 2008 |
| Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers C Girardot, J Scholtalbers, S Sauer, SY Su, EEM Furlong BMC bioinformatics 17, 1-6, 2016 | 173 | 2016 |
| Model-based method for transcription factor target identification with limited data A Honkela, C Girardot, EH Gustafson, YH Liu, EEM Furlong, ... Proceedings of the National Academy of Sciences 107 (17), 7793-7798, 2010 | 129 | 2010 |
| Analysis of variation at transcription factor binding sites in Drosophila and humans M Spivakov, J Akhtar, P Kheradpour, K Beal, C Girardot, G Koscielny, ... Genome biology 13, 1-15, 2012 | 120 | 2012 |
| Expanding the circuitry of pluripotency by selective isolation of chromatin-associated proteins MR Rafiee, C Girardot, G Sigismondo, J Krijgsveld Molecular cell 64 (3), 624-635, 2016 | 116 | 2016 |
| A conserved role for Snail as a potentiator of active transcription M Rembold, L Ciglar, JO Yáñez-Cuna, RP Zinzen, C Girardot, A Jain, ... Genes & development 28 (2), 167-181, 2014 | 95 | 2014 |
| Haploinsufficiency of the intellectual disability gene SETD5 disturbs developmental gene expression and cognition E Deliu, N Arecco, J Morandell, CP Dotter, X Contreras, C Girardot, ... Nature Neuroscience 21 (12), 1717-1727, 2018 | 87 | 2018 |
| Dual functionality of cis-regulatory elements as developmental enhancers and Polycomb response elements J Erceg, T Pakozdi, R Marco-Ferreres, Y Ghavi-Helm, C Girardot, ... Genes & development 31 (6), 590-602, 2017 | 84 | 2017 |
| Elucidation of an archaeal replication protein network to generate enhanced PCR enzymes M Motz, I Kober, C Girardot, E Loeser, U Bauer, M Albers, G Moeckel, ... Journal of Biological Chemistry 277 (18), 16179-16188, 2002 | 84 | 2002 |
| Subtle changes in motif positioning cause tissue-specific effects on robustness of an enhancer's activity J Erceg, TE Saunders, C Girardot, DP Devos, L Hufnagel, EEM Furlong PLoS genetics 10 (1), e1004060, 2014 | 70 | 2014 |
| A stem cell zoo uncovers intracellular scaling of developmental tempo across mammals J Lázaro, M Costanzo, M Sanaki-Matsumiya, C Girardot, M Hayashi, ... Cell Stem Cell 30 (7), 938-949. e7, 2023 | 53 | 2023 |
| Lineage-resolved enhancer and promoter usage during a time course of embryogenesis JP Reddington, DA Garfield, OM Sigalova, AK Calviello, ... Developmental cell 55 (5), 648-664. e9, 2020 | 51 | 2020 |
| Uncoupling evolutionary changes in DNA sequence, transcription factor occupancy and enhancer activity P Khoueiry, C Girardot, L Ciglar, PC Peng, EH Gustafson, S Sinha, ... Elife 6, e28440, 2017 | 49 | 2017 |
| 4D Xpress : a database for cross-species expression pattern comparisons Y Haudry, H Berube, I Letunic, PD Weeber, J Gagneur, C Girardot, ... Nucleic acids research 36 (suppl_1), D847-D853, 2007 | 43 | 2007 |
| Opbp is a new architectural/insulator protein required for ribosomal gene expression N Zolotarev, O Maksimenko, O Kyrchanova, E Sokolinskaya, I Osadchiy, ... Nucleic acids research 45 (21), 12285-12300, 2017 | 37 | 2017 |
| CTCF, BEAF-32, and CP190 are not required for the establishment of TADs in early Drosophila embryos but have locus-specific roles GR Cavalheiro, C Girardot, RR Viales, T Pollex, TBN Cao, P Lacour, ... Science Advances 9 (5), eade1085, 2023 | 29 | 2023 |
