Comparative genomics of the major parasitic worms International Helminth Genomes Consortium Nature genetics 51 (1), 163, 2019 | 375 | 2019 |
The genomic basis of parasitism in the Strongyloides clade of nematodes VL Hunt, IJ Tsai, A Coghlan, AJ Reid, N Holroyd, BJ Foth, A Tracey, ... Nature genetics 48 (3), 299, 2016 | 241 | 2016 |
Efficient phasing and imputation of low-coverage sequencing data using large reference panels S Rubinacci, DM Ribeiro, RJ Hofmeister, O Delaneau Nature Genetics 53 (1), 120-126, 2021 | 212 | 2021 |
Protein complex scaffolding predicted as a prevalent function of long non-coding RNAs DM Ribeiro, A Zanzoni, A Cipriano, R Delli Ponti, L Spinelli, M Ballarino, ... Nucleic acids research 46 (2), 917-928, 2018 | 87 | 2018 |
Differentially expressed genes reflect disease-induced rather than disease-causing changes in the transcriptome E Porcu, MC Sadler, K Lepik, C Auwerx, AR Wood, A Weihs, ... Nature Communications 12 (1), 1-9, 2021 | 70 | 2021 |
The genome of the sparganosis tapeworm Spirometra erinaceieuropaei isolated from the biopsy of a migrating brain lesion HM Bennett, HP Mok, E Gkrania-Klotsas, IJ Tsai, EJ Stanley, NM Antoun, ... Genome biology 15 (11), 510, 2014 | 58 | 2014 |
Accurate rare variant phasing of whole-genome and whole-exome sequencing data in the UK Biobank RJ Hofmeister*, DM Ribeiro*, S Rubinacci*, O Delaneau Nature Genetics, 1-7, 2023 | 38 | 2023 |
Understanding protein multifunctionality: from short linear motifs to cellular functions A Zanzoni, DM Ribeiro, C Brun Cellular and Molecular Life Sciences, 1-6, 2019 | 37 | 2019 |
MiR-277/4989 regulate transcriptional landscape during juvenile to adult transition in the parasitic helminth Schistosoma mansoni AV Protasio, S van Dongen, J Collins, L Quintais, DM Ribeiro, F Sessler, ... PLoS neglected tropical diseases 11 (5), e0005559, 2017 | 36 | 2017 |
MoonDB 2.0: an updated database of extreme multifunctional and moonlighting proteins DM Ribeiro, G Briere, B Bely, L Spinelli, C Brun Nucleic acids research 47 (D1), D398-D402, 2019 | 33 | 2019 |
The molecular basis, genetic control and pleiotropic effects of local gene co-expression DM Ribeiro, S Rubinacci, A Ramisch, RJ Hofmeister, ET Dermitzakis, ... Nature Communications 12 (1), 1-13, 2021 | 25 | 2021 |
Post-transcriptional regulatory patterns revealed by protein-RNA interactions A Zanzoni, L Spinelli, DM Ribeiro, GG Tartaglia, C Brun Scientific reports 9 (1), 1-13, 2019 | 24 | 2019 |
Shared regulation and functional relevance of local gene co-expression revealed by single cell analysis D M Ribeiro, C Ziyani, O Delaneau Communications biology 5 (1), 1-11, 2022 | 10 | 2022 |
Parent-of-Origin inference for biobanks RJ Hofmeister, S Rubinacci, DM Ribeiro, A Buil, Z Kutalik, O Delaneau Nature Communications 13 (1), 1-15, 2022 | 8* | 2022 |
The role of 3′ UTR-protein complexes in the regulation of protein multifunctionality and subcellular localization DM Ribeiro, A Prod’homme, A Teixeira, A Zanzoni, C Brun Nucleic Acids Research 48 (12), 6491-6502, 2020 | 7 | 2020 |
Genetic variation in cis-regulatory domains suggests cell type-specific regulatory mechanisms in immunity D Avalos, G Rey, DM Ribeiro, A Ramisch, ET Dermitzakis, O Delaneau Communications Biology 6 (1), 335, 2023 | 4* | 2023 |
Non-coding rare variant associations with blood traits on 166,740 UK Biobank genomes D Ribeiro, O Delaneau bioRxiv, 2023.12. 01.569422, 2023 | 1 | 2023 |
Leveraging large-scale biobank EHRs to enhance pharmacogenetics of cardiometabolic disease medications MC Sadler, A Apostolov, C Cevallos, DM Ribeiro, RB Altman, Z Kutalik medRxiv, 2024.04. 06.24305415, 2024 | | 2024 |
Multimodal single cell analysis infers widespread enhancer co-activity in a lymphoblastoid cell line C Ziyani, O Delaneau, DM Ribeiro Communications Biology 6 (1), 563, 2023 | | 2023 |
Temporal variation of regulatory organization based on longitudinal RNA-seq data in twins A Ramisch, D Ribeiro, JS Moustafa, G Leday, Y Jiao, G Nicholson, ... EUROPEAN JOURNAL OF HUMAN GENETICS 28 (SUPPL 1), 729-730, 2020 | | 2020 |