Peptide binding predictions for HLA DR, DP and DQ molecules P Wang, J Sidney, Y Kim, A Sette, O Lund, M Nielsen, B Peters
BMC bioinformatics 11 (1), 1-12, 2010
554 2010 Measurement of the Ratio {sigma}{sub tt}/{sigma}{sub Z/{gamma}}{sup*}{sub {yields} ll} and Precise Extraction of the tt Cross Section T Aaltonen, P Mehtala, R Orava, K Osterberg, H Saarikko, N van Remortel, ...
Physical Review Letters 105 (1), 2010
548 2010 Immune epitope database analysis resource Y Kim, J Ponomarenko, Z Zhu, D Tamang, P Wang, J Greenbaum, ...
Nucleic acids research 40 (W1), W525-W530, 2012
439 2012 Pre-existing immunity against swine-origin H1N1 influenza viruses in the general human population JA Greenbaum, MF Kotturi, Y Kim, C Oseroff, K Vaughan, N Salimi, R Vita, ...
Proceedings of the National Academy of Sciences 106 (48), 20365-20370, 2009
375 2009 Immune epitope database analysis resource (IEDB-AR) Q Zhang, P Wang, Y Kim, P Haste-Andersen, J Beaver, PE Bourne, ...
Nucleic acids research 36 (suppl_2), W513-W518, 2008
322 2008 Memory T Cells in Latent Mycobacterium tuberculosis Infection Are Directed against Three Antigenic Islands and Largely Contained in a CXCR3+ CCR6+ Th1 … CS Lindestam Arlehamn, A Gerasimova, F Mele, R Henderson, J Swann, ...
PLoS pathogens 9 (1), e1003130, 2013
210 2013 Derivation of an amino acid similarity matrix for peptide: MHC binding and its application as a Bayesian prior Y Kim, J Sidney, C Pinilla, A Sette, B Peters
BMC bioinformatics 10 (1), 1-11, 2009
186 2009 Analysis of heritability and shared heritability based on genome-wide association studies for 13 cancer types JN Sampson, WA Wheeler, M Yeager, O Panagiotou, Z Wang, SI Berndt, ...
JNCI: Journal of the National Cancer Institute 107 (12), 2015
155 2015 Evidence for T Aaltonen, BÁ González, S Amerio, D Amidei, A Anastassov, A Annovi, ...
Physical Review D 84 (3), 031104, 2011
148 2011 Determination of the top-quark pole mass using t t ¯ G Aad, B Abbott, J Abdallah, S Abdel Khalek, R Aben, B Abi, M Abolins, ...
Journal of High Energy Physics 2015 (10), 1-41, 2015
131 2015 A unified and quantitative receptor model for the microtubule binding of paclitaxel and epothilone M Wang, X Xia, Y Kim, D Hwang, JM Jansen, M Botta, DC Liotta, ...
Organic letters 1 (1), 43-46, 1999
131 1999 Automated benchmarking of peptide-MHC class I binding predictions T Trolle, IG Metushi, JA Greenbaum, Y Kim, J Sidney, O Lund, A Sette, ...
Bioinformatics 31 (13), 2174-2181, 2015
115 2015 Detecting conserved interaction patterns in biological networks M Koyutürk, Y Kim, S Subramaniam, W Szpankowski, A Grama
Journal of Computational Biology 13 (7), 1299-1322, 2006
112 2006 Imputation and subset-based association analysis across different cancer types identifies multiple independent risk loci in the TERT-CLPTM1L region on … Z Wang, B Zhu, M Zhang, H Parikh, J Jia, CC Chung, JN Sampson, ...
Human molecular genetics 23 (24), 6616-6633, 2014
97 2014 Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions Y Kim, J Sidney, S Buus, A Sette, M Nielsen, B Peters
BMC bioinformatics 15 (1), 1-9, 2014
74 2014 Vaccines based on replication incompetent Ad26 viral vectors: Standardized template with key considerations for a risk/benefit assessment J Custers, D Kim, M Leyssen, M Gurwith, F Tomaka, J Robertson, ...
Vaccine 39 (22), 3081-3101, 2021
61 2021 Machine learning competition in immunology–Prediction of HLA class I binding peptides GL Zhang, HR Ansari, P Bradley, GC Cawley, T Hertz, X Hu, N Jojic, ...
Journal of immunological methods 374 (1-2), 1-4, 2011
60 2011 Sterile immunity to malaria after DNA prime/adenovirus boost immunization is associated with effector memory CD8+ T cells targeting AMA1 class I epitopes M Sedegah, MR Hollingdale, F Farooq, H Ganeshan, M Belmonte, Y Kim, ...
PloS one 9 (9), e106241, 2014
59 2014 Applications for T-cell epitope queries and tools in the Immune Epitope Database and Analysis Resource Y Kim, A Sette, B Peters
Journal of immunological methods 374 (1-2), 62-69, 2011
58 2011 Locally defined protein phylogenetic profiles reveal previously missed protein interactions and functional relationships Y Kim, S Subramaniam
Proteins: Structure, Function, and Bioinformatics 62 (4), 1115-1124, 2006
54 2006 