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Soumendranath Bhakat
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Theory and Applications of Covalent Docking in Drug Discovery: Merits and Pitfalls
H Khumalo, S Bhakat, ME Soliman
Molecules 20, 1984-2000, 2015
1682015
An integrated molecular dynamics, principal component analysis and residue interaction network approach reveals the impact of M184V mutation on HIV reverse transcriptase …
S Bhakat, AJM Martin, MES Soliman
Molecular BioSystems 10 (8), 2215-2228, 2014
592014
Monoamine oxidase inhibitory activity of 2-aryl-4H-chromen-4-ones
BV Nayak, SC Yabanoglu, S Bhakat, AK Timiri, BN Sinha, G Ucar, ...
Bioorganic Chemistry 58, 72-80, 2015
542015
A perspective on targeting non-structural proteins to combat neglected tropical diseases: Dengue, West Nile and Chikungunya viruses
S Bhakat, W Karubiu, V Jayaprakash, MES Soliman
European journal of medicinal chemistry 87, 677-702, 2014
542014
Investigation of Flap Flexibility of β-Secretase Using Molecular Dynamic Simulations
HM Kumalo, S Bhakat, ME Soliman
Journal of Biomolecular Structure and Dynamics, 2015
372015
Chikungunya Virus (CHIKV) Inhibitors from Natural Sources: A Medicinal Chemistry Perspective
S Bhakat, M Soliman
Journal of Natural Medicines, 2015
352015
Multi-drug Resistance Profile of PR20 HIV-1 Protease is attributed to Distorted Conformational and Drug Binding Landscape: Molecular Dynamics Insights
S Bhakat, S Chetty, AJM Martin, MES Soliman
Journal of Biomolecular Structure and Dynamics, 2015
352015
Accelerating cryptic pocket discovery using AlphaFold
A Meller, S Bhakat, S Solieva, GR Bowman
Journal of Chemical Theory and Computation 19 (14), 4355-4363, 2023
342023
Flap dynamics in aspartic proteases: A computational perspective
M Mahanti, S Bhakat, UJ Nilsson, P Söderhjelm
Chemical biology & drug design 88 (2), 159-177, 2016
302016
Flap Dynamics of Plasmepsin Proteases: Proposed Parameters and Molecular Dynamics Insight
W Karubiu, S Bhakat, L McGillewie, MES Soliman
Molecular Biosystems 11, 1061-1066, 2015
29*2015
Reaching beyond HIV/HCV: Nelfinavir as a potential starting point for broad-spectrum protease inhibitors against dengue and chikungunya virus
S Bhakat, L Delang, S Kaptein, J Neyts, P Leyssen, V Jayaprakash
RSC Advances, 2015
272015
New paradigm of an old target: an update on structural biology and current progress in drug design towards Plasmepsin II
N Dan, S Bhakat
European Journal of Medicinal Chemistry 95, 324-348, 2015
262015
Heat Shock Protein 90 (Hsp90) as Anti-cancer Target for Drug Discovery: An Ample Computational Perspective
HM Kumalo, S Bhakat, MES Soliman
Chemical Biology & Drug Design, 2015
242015
Resolving the problem of trapped water in binding cavities: prediction of host–guest binding free energies in the SAMPL5 challenge by funnel metadynamics
S Bhakat, P Söderhjelm
Journal of Computer-Aided Molecular Design, 2016
222016
Collective variable discovery in the age of machine learning: reality, hype and everything in between
S Bhakat
RSC advances 12 (38), 25010-25024, 2022
192022
Compensatory role of double mutation N348I/M184V on nevirapine binding landscape: Insight from molecular dynamics simulation
W Karubiu, S Bhakat, MES Soliman
The protein journal 33, 432-446, 2014
192014
Identification of binding mode and prospective structural features of novel Nef protein inhibitors as potential anti-HIV drugs
S Moonsamy, S Bhakat, M Ramesh, MES Soliman
Cell biochemistry and biophysics 75, 49-64, 2017
152017
Insights on the structural perturbations in human MTHFR Ala222Val mutant by protein modeling and molecular dynamics
PA Abhinanda, F Shaikh, S Bhakat, A Radadiya, LVKS Bhaskar, A Shah, ...
Journal of Biomolecular Structure and Dynamics, 2015
152015
Flap Dynamics in Pepsin-Like Aspartic Proteases: A Computational Perspective Using Plasmepsin-II and BACE-1 as Model Systems
S Bhakat, P Söderhjelm
Journal of Chemical Information and Modelling 62 (4), 914–926, 2022
142022
Single Active Site Mutation Causes Serious Resistance of HIV Reverse Transcriptase to Lamivudine: Insight from Multiple Molecular Dynamics Simulations
S Moonsamy, S Bhakat, R Walker, MES Soliman
Cell Biochemistry and Biophysics, 2015
142015
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