| Genome sequence of the palaeopolyploid soybean J Schmutz, SB Cannon, J Schlueter, J Ma, T Mitros, W Nelson, DL Hyten, ... nature 463 (7278), 178-183, 2010 | 4575 | 2010 |
| An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plants M Libault, A Farmer, T Joshi, K Takahashi, RJ Langley, LD Franklin, J He, ... The Plant Journal 63 (1), 86-99, 2010 | 431 | 2010 |
| Inferring gene regulatory networks from multiple microarray datasets Y Wang, T Joshi, XS Zhang, D Xu, L Chen Bioinformatics 22 (19), 2413-2420, 2006 | 384 | 2006 |
| A critical assessment of Mus musculusgene function prediction using integrated genomic evidence L Peña-Castillo, M Tasan, CL Myers, H Lee, T Joshi, C Zhang, Y Guan, ... Genome biology 9, 1-19, 2008 | 298 | 2008 |
| Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population RJ Schmitz, Y He, O Valdés-López, SM Khan, T Joshi, MA Urich, JR Nery, ... Genome research 23 (10), 1663-1674, 2013 | 269 | 2013 |
| MusiteDeep: a deep-learning framework for general and kinase-specific phosphorylation site prediction D Wang, S Zeng, C Xu, W Qiu, Y Liang, T Joshi, D Xu Bioinformatics 33 (24), 3909-3916, 2017 | 224 | 2017 |
| Transcriptional and Physiological Responses of Bradyrhizobium japonicum to Desiccation-Induced Stress EJ Cytryn, DP Sangurdekar, JG Streeter, WL Franck, W Chang, G Stacey, ... Journal of bacteriology 189 (19), 6751-6762, 2007 | 219 | 2007 |
| Soybean (Glycine max) SWEET gene family: insights through comparative genomics, transcriptome profiling and whole genome re-sequence analysis G Patil, B Valliyodan, R Deshmukh, S Prince, B Nicander, M Zhao, ... BMC genomics 16, 1-16, 2015 | 209 | 2015 |
| Landscape of genomic diversity and trait discovery in soybean B Valliyodan, D Qiu, G Patil, P Zeng, J Huang, L Dai, C Chen, Y Li, T Joshi, ... Scientific reports 6 (1), 23598, 2016 | 180 | 2016 |
| Genome editing in plants: exploration of technological advancements and challenges S Vats, S Kumawat, V Kumar, GB Patil, T Joshi, H Sonah, TR Sharma, ... Cells 8 (11), 1386, 2019 | 139 | 2019 |
| Prediction of novel miRNAs and associated target genes in Glycine max T Joshi, Z Yan, M Libault, DH Jeong, S Park, PJ Green, DJ Sherrier, ... BMC bioinformatics 11, 1-9, 2010 | 139 | 2010 |
| The DNA binding landscape of the maize AUXIN RESPONSE FACTOR family M Galli, A Khakhar, Z Lu, Z Chen, S Sen, T Joshi, JL Nemhauser, ... Nature communications 9 (1), 4526, 2018 | 135 | 2018 |
| SNP discovery by high-throughput sequencing in soybean X Wu, C Ren, T Joshi, T Vuong, D Xu, HT Nguyen BMC genomics 11, 1-10, 2010 | 129 | 2010 |
| Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression M Hajduch, LB Hearne, JA Miernyk, JE Casteel, T Joshi, GK Agrawal, ... Plant physiology 152 (4), 2078-2087, 2010 | 128 | 2010 |
| Transcription Profiling of Soybean Nodulation by Bradyrhizobium japonicum L Brechenmacher, MY Kim, M Benitez, M Li, T Joshi, B Calla, MP Lee, ... Molecular Plant-Microbe Interactions 21 (5), 631-645, 2008 | 127 | 2008 |
| SoyDB: a knowledge database of soybean transcription factors Z Wang, M Libault, T Joshi, B Valliyodan, HT Nguyen, D Xu, G Stacey, ... BMC Plant Biology 10, 1-12, 2010 | 122 | 2010 |
| Whole genome co-expression analysis of soybean cytochrome P450 genes identifies nodulation-specific P450 monooxygenases SK Guttikonda, J Trupti, NC Bisht, H Chen, YQC An, S Pandey, D Xu, ... BMC plant biology 10, 1-19, 2010 | 119 | 2010 |
| Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions L Song, S Prince, B Valliyodan, T Joshi, JV Maldonado dos Santos, ... BMC genomics 17, 1-17, 2016 | 118 | 2016 |
| Legume transcription factor genes: what makes legumes so special? M Libault, T Joshi, VA Benedito, D Xu, MK Udvardi, G Stacey Plant physiology 151 (3), 991-1001, 2009 | 116 | 2009 |
| Quantitative assessment of relationship between sequence similarity and function similarity T Joshi, D Xu BMC genomics 8, 1-10, 2007 | 116 | 2007 |
