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Andrea Califano
Andrea Califano
Dirección de correo verificada de c2b2.columbia.edu
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Prediction of central nervous system embryonal tumour outcome based on gene expression
SL Pomeroy, P Tamayo, M Gaasenbeek, LM Sturla, M Angelo, ...
Nature 415 (6870), 436-442, 2002
27672002
ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context
AA Margolin, I Nemenman, K Basso, C Wiggins, G Stolovitzky, RD Favera, ...
BMC bioinformatics 7 (1), 1-15, 2006
27482006
The immune landscape of cancer
V Thorsson, DL Gibbs, SD Brown, D Wolf, DS Bortone, THO Yang, ...
Immunity 48 (4), 812-830. e14, 2018
25182018
Reverse engineering of regulatory networks in human B cells
K Basso, AA Margolin, G Stolovitzky, U Klein, R Dalla-Favera, A Califano
Nature genetics 37 (4), 382-390, 2005
15722005
A promoter-level mammalian expression atlas
Nature 507 (7493), 462-470, 2014
14432014
The transcriptional network for mesenchymal transformation of brain tumours
MS Carro, WK Lim, MJ Alvarez, RJ Bollo, X Zhao, EY Snyder, EP Sulman, ...
Nature 463 (7279), 318-325, 2010
12232010
Mutations of multiple genes cause deregulation of NF-κB in diffuse large B-cell lymphoma
M Compagno, WK Lim, A Grunn, SV Nandula, M Brahmachary, Q Shen, ...
Nature 459 (7247), 717-721, 2009
11602009
Gene expression profiling of B cell chronic lymphocytic leukemia reveals a homogeneous phenotype related to memory B cells
U Klein, Y Tu, GA Stolovitzky, M Mattioli, G Cattoretti, H Husson, ...
The Journal of experimental medicine 194 (11), 1625-1638, 2001
11462001
NOTCH1 directly regulates c-MYC and activates a feed-forward-loop transcriptional network promoting leukemic cell growth
T Palomero, WK Lim, DT Odom, ML Sulis, PJ Real, A Margolin, ...
Proceedings of the National Academy of Sciences 103 (48), 18261-18266, 2006
9492006
The DLEU2/miR-15a/16-1 cluster controls B cell proliferation and its deletion leads to chronic lymphocytic leukemia
U Klein, M Lia, M Crespo, R Siegel, Q Shen, T Mo, A Ambesi-Impiombato, ...
Cancer cell 17 (1), 28-40, 2010
9452010
An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma
P Sumazin, X Yang, HS Chiu, WJ Chung, A Iyer, D Llobet-Navas, ...
Cell 147 (2), 370-381, 2011
7222011
Structure-based prediction of protein–protein interactions on a genome-wide scale
QC Zhang, D Petrey, L Deng, L Qiang, Y Shi, CA Thu, B Bisikirska, ...
Nature 490 (7421), 556-560, 2012
6852012
Cross-species single-cell analysis of pancreatic ductal adenocarcinoma reveals antigen-presenting cancer-associated fibroblasts
E Elyada, M Bolisetty, P Laise, WF Flynn, ET Courtois, RA Burkhart, ...
Cancer discovery 9 (8), 1102-1123, 2019
6372019
Toward understanding and exploiting tumor heterogeneity
AA Alizadeh, V Aranda, A Bardelli, C Blanpain, C Bock, C Borowski, ...
Nature medicine 21 (8), 846-853, 2015
6372015
Transcriptional analysis of the B cell germinal center reaction
U Klein, Y Tu, GA Stolovitzky, JL Keller, J Haddad Jr, V Miljkovic, ...
Proceedings of the National Academy of Sciences 100 (5), 2639-2644, 2003
4972003
Functional characterization of somatic mutations in cancer using network-based inference of protein activity
MJ Alvarez, Y Shen, FM Giorgi, A Lachmann, BB Ding, BH Ye, A Califano
Nature genetics 48 (8), 838-847, 2016
4652016
tRNA-derived microRNA modulates proliferation and the DNA damage response and is down-regulated in B cell lymphoma
RL Maute, C Schneider, P Sumazin, A Holmes, A Califano, K Basso, ...
Proceedings of the National Academy of Sciences 110 (4), 1404-1409, 2013
4472013
Reverse engineering cellular networks
AA Margolin, K Wang, WK Lim, M Kustagi, I Nemenman, A Califano
Nature protocols 1 (2), 662-671, 2006
4132006
Dialogue on reverse‐engineering assessment and methods: the DREAM of high‐throughput pathway inference
G Stolovitzky, DON Monroe, A Califano
Annals of the New York Academy of Sciences 1115 (1), 1-22, 2007
4042007
A human B‐cell interactome identifies MYB and FOXM1 as master regulators of proliferation in germinal centers
C Lefebvre, P Rajbhandari, MJ Alvarez, P Bandaru, WK Lim, M Sato, ...
Molecular systems biology 6 (1), 377, 2010
3882010
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