John St. John

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Peter UlzFreenomeDirección de correo verificada de freenome.com
Ellen HeitzerInstitute of Human GeneticsDirección de correo verificada de medunigraz.at
Benedict PatenProfessor; Associate Director, UC Santa Cruz Genomics Institute, University of CaliforniaDirección de correo verificada de ucsc.edu
Jonathan S. WeissmanUCSF/HHMIDirección de correo verificada de ucsf.edu
Richard E. GreenProf of Biomolecular Engineering, UCSC, UC Santa Cruz Genomics InstituteDirección de correo verificada de soe.ucsc.edu
Evangelos Pazarentzos, Ph.D.AstraZenecaDirección de correo verificada de astrazeneca.com
Dent EarlStaff Software Engineer at Google. Formerly of UCSC, UCLA.Dirección de correo verificada de soe.ucsc.edu
Mark DiekhansUniversity of California, Santa Cruz; UC Santa Cruz Genomics InstituteDirección de correo verificada de soe.ucsc.edu
David HausslerScientific Director, UC Santa Cruz Genomics Institute, University of California, Santa CruzDirección de correo verificada de soe.ucsc.edu
Beth ShapiroUC Santa Cruz Genomics Institute; Ecology and Evolutionary Biology, UC Santa CruzDirección de correo verificada de ucsc.edu
Tara FultonEnvironment and Climate Change CanadaDirección de correo verificada de ualberta.ca
Mathias StillerInstitute of Pathology, University Leipzig, GermanyDirección de correo verificada de medizin.uni-leipzig.de
Fiona McCarthyProfessor, School of Animal and Comparative Biomedical Sciences, University of ArizonaDirección de correo verificada de email.arizona.edu
Bruce BowermanInstitute of Molecular Biology, University of OregonDirección de correo verificada de uoregon.edu
Amanda ChongWellcome Centre for Human GeneticsDirección de correo verificada de well.ox.ac.uk
Weerachai JaratlerdsiriSchool of Medical Sciences, Faculty of Medicine & Health, University of SydneyDirección de correo verificada de sydney.edu.au
Travis C. GlennDept. Environmental Health Science & Institute of Bioinformatics, University of GeorgiaDirección de correo verificada de uga.edu
Joel ParkerUniversity of North Carolina at Chapel HillDirección de correo verificada de email.unc.edu

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John St. John

Machine Learning Scientist @ Nvidia

Dirección de correo verificada de nvidia.com - Página principal

Machine Learning Deep Learning Computational Biology Epigenomics Cancer


Título Ordenar por citas Ordenar por año Ordenar por título	Citado por Citado por	Año
Assemblathon 1: a competitive assessment of de novo short read assembly methods D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ... Genome research 21 (12), 2224-2241, 2011	637	2011
Evolution and clinical impact of co-occurring genetic alterations in advanced-stage EGFR-mutant lung cancers CM Blakely, TBK Watkins, W Wu, B Gini, JJ Chabon, CE McCoach, ... Nature genetics 49 (12), 1693-1704, 2017	500	2017
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs RE Green, EL Braun, J Armstrong, D Earl, N Nguyen, G Hickey, ... Science 346 (6215), 1254449, 2014	372	2014
The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage J Abramyan, D Badenhorst, KK Biggar, GM Borchert, CW Botka, ... Genome Biology 14 (3), R28, 2013	369	2013
Inference of transcription factor binding from cell-free DNA enables tumor subtype prediction and early detection P Ulz, S Perakis, Q Zhou, T Moser, J Belic, I Lazzeri, A Wölfler, A Zebisch, ... Nature communications 10 (1), 4666, 2019	207	2019
Genomic evidence for island population conversion resolves conflicting theories of polar bear evolution JA Cahill, RE Green, TL Fulton, M Stiller, F Jay, N Ovsyanikov, ... PLoS genetics 9 (3), e1003345, 2013	192	2013
Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes JA St John, EL Braun, SR Isberg, LG Miles, AY Chong, J Gongora, ... Genome Biology 13 (1), 415, 2012	163	2012
Machine learning enables detection of early-stage colorectal cancer by whole-genome sequencing of plasma cell-free DNA N Wan, D Weinberg, TY Liu, K Niehaus, EA Ariazi, D Delubac, A Kannan, ... BMC cancer 19, 1-10, 2019	155	2019
Cactus graphs for genome comparisons B Paten, M Diekhans, D Earl, JS John, J Ma, B Suh, D Haussler Journal of Computational Biology 18 (3), 469-481, 2011	136	2011
Whole genome duplications and expansion of the vertebrate GATA transcription factor gene family W Gillis, J St John, B Bowerman, S Schneider BMC evolutionary biology 9 (1), 207, 2009	64	2009
Oncogenic activation of the PI3-kinase p110β isoform via the tumor-derived PIK3CβD1067V kinase domain mutation E Pazarentzos, P Giannikopoulos, G Hrustanovic, J St John, VR Olivas, ... Oncogene 35 (9), 1198-1205, 2016	46	2016
Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling ES Rice, S Kohno, JS John, S Pham, J Howard, LF Lareau, BL O'Connell, ... Genome research 27 (5), 686-696, 2017	45	2017
Integrated systems and methods for automated processing and analysis of biological samples, clinical information processing and clinical trial matching T Matsuguchi, AF Caulin, JAS John, S Soi, EC Ahmed, E Pazarentzos, ... US Patent App. 15/727,491, 2018	40	2018
Integrated systems and methods for automated processing and analysis of biological samples, clinical information processing and clinical trial matching T Matsuguchi, JAS John, E Pazarentzos, W Polkinghorn, ... US Patent App. 15/727,501, 2018	29	2018
Comparative genome analyses reveal distinct structure in the saltwater crocodile MHC W Jaratlerdsiri, J Deakin, RM Godinez, X Shan, DG Peterson, S Marthey, ... PloS one 9 (12), e114631, 2014	26	2014
Blood-based detection of early-stage colorectal cancer using multiomics and machine learning G Putcha, TY Liu, E Ariazi, M Bertin, A Drake, M Dzamba, G Hogan, ... Abstract presented at: the American Society of Clinical Oncology (ASCO) GI …, 2020	21	2020
Cactus Graphs for Genome Comparisons B Paten, M Diekhans, D Earl, J St. John, J Ma, B Suh, D Haussler Research in Computational Molecular Biology, 410-425, 2010	16	2010
Evaluation of a sensitive blood test for the detection of colorectal advanced adenomas in a prospective cohort using a multiomics approach J Lin, E Ariazi, M Dzamba, TK Hsu, S Kothen-Hill, K Li, TY Liu, S Mahajan, ... J Clin Oncol 39, 43, 2021	8	2021
Inference of tumor cell-specific transcription factor binding from cell-free DNA enables tumor subtype prediction and early detection of cancer P Ulz, S Perakis, Q Zhou, T Moser, J Belic, I Lazzeri, A Wlfler, A Zebisch, ... bioRxiv, 2019	7	2019
Methods for Predicting EGFR Tyrosine Kinase Inhibitor Efficacy P Giannikopoulos, JS John, J Parker, T Bivona US Patent App. 14/671,213, 2016	5	2016

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