WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research DN Slenter, M Kutmon, K Hanspers, A Riutta, J Windsor, N Nunes, ... Nucleic acids research 46 (D1), D661-D667, 2018 | 932 | 2018 |
WikiPathways: connecting communities M Martens, A Ammar, A Riutta, A Waagmeester, DN Slenter, K Hanspers, ... Nucleic Acids Research 49 (D1), D613-D621, 2021 | 666 | 2021 |
Wikidata as a knowledge graph for the life sciences A Waagmeester, G Stupp, S Burgstaller-Muehlbacher, BM Good, M Griffith, ... Elife 9, e52614, 2020 | 130 | 2020 |
Bloodstain pattern analysis: implementation of a fluid dynamic model for position determination of victims N Laan, KG de Bruin, D Slenter, J Wilhelm, M Jermy, D Bonn Scientific reports 5 (1), 11461, 2015 | 102 | 2015 |
COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ... Molecular systems biology 17 (10), e10387, 2021 | 87 | 2021 |
Guiding the choice of informatics software and tools for lipidomics research applications Z Ni, M Wölk, G Jukes, K Mendivelso Espinosa, R Ahrends, L Aimo, ... Nature methods 20 (2), 193-204, 2023 | 39 | 2023 |
Ten simple rules for creating reusable pathway models for computational analysis and visualization K Hanspers, M Kutmon, SL Coort, D Digles, LJ Dupuis, F Ehrhart, F Hu, ... PLOS Computational Biology 17 (8), e1009226, 2021 | 14 | 2021 |
Interpreting the lipidome: bioinformatic approaches to embrace the complexity JE Kyle, L Aimo, AJ Bridge, G Clair, M Fedorova, JB Helms, MR Molenaar, ... Metabolomics 17, 1-10, 2021 | 13 | 2021 |
Beyond pathway analysis: Identification of active subnetworks in Rett syndrome RA Miller, F Ehrhart, LMT Eijssen, DN Slenter, LMG Curfs, CT Evelo, ... Frontiers in genetics 10, 59, 2019 | 13 | 2019 |
Research Techniques Made Simple: Lipidomic Analysis in Skin Research M Sochorová, K Vávrová, M Fedorova, Z Ni, D Slenter, M Kutmon, ... Journal of Investigative Dermatology 142 (1), 4-11. e1, 2022 | 9 | 2022 |
Knowledge graphs and wikidata subsetting JE Labra-Gayo, AG Hevia, DF Álvarez, A Ammar, D Brickley, AJG Gray, ... BioHackrXiv, 2021 | 4 | 2021 |
Wikidata and scholia as a hub linking chemical knowledge E Willighagen, D Slenter, D Mietchen, C Evelo, F Nielsen 11th International Conference on Chemical Structures. Program & Abstracts, 146, 2018 | 4 | 2018 |
WikiPathways: Integrating Pathway Knowledge with Clinical Data DN Slenter, M Kutmon, EL Willighagen Physician's Guide to the Diagnosis, Treatment, and Follow-Up of Inherited …, 2022 | 2 | 2022 |
BridgeDb and Wikidata: a powerful combination generating interoperable open research (BridgeDb) E Willighagen, M Kutmon, M Martens, D Slenter Research Ideas and Outcomes 8, e83031, 2022 | 1 | 2022 |
Extending inherited metabolic disorder diagnostics with biomarker interaction visualizations DN Slenter, IMGM Hemel, CT Evelo, J Bierau, EL Willighagen, ... Orphanet Journal of Rare Diseases 18 (1), 95, 2023 | | 2023 |
Discovering life’s directed metabolic (sub)paths to interpret biochemical markers using the DSMN ELW Denise Slenter, M. Kutmon ,Chris T. Evelo ChemRxiv, 2022 | | 2022 |
A Systems Biology Workflow to Support the Diagnosis of Pyrimidine and Urea Cycle Disorders DN Slenter, IMGM Hemel, CT Evelo, J Bierau, EL Willighagen, ... medRxiv, 2022.01. 31.21265847, 2022 | | 2022 |
COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms (vol 17, e10387, 2021) M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ... Molecular Systems Biology, 2-2, 2021 | | 2021 |
LINKING GENOTYPE TO PHENOTYPE BY BIOLOGICAL PATHWAYS F Ehrhart, DN Slenter, NB Sangani, EL Willighagen, LMG Curfs, CT Evelo JOURNAL OF INTELLECTUAL DISABILITY RESEARCH 63 (9), 1080-1081, 2019 | | 2019 |
Open chemistry registry and mapping platform based on open source cheminformatics toolkits V Tkachenko, D Slenter, N Jeliazkova, A Gaulton, A Williams, C Steinbeck, ... ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 254, 2017 | | 2017 |