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Martin D Muggli
Martin D Muggli
Alumni
Dirección de correo verificada de alumni.colostate.edu
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Citado por
Citado por
Año
Succinct colored de Bruijn graphs
MD Muggli, A Bowe, NR Noyes, PS Morley, KE Belk, R Raymond, T Gagie, ...
Bioinformatics 33 (20), 3181-3187, 2017
1222017
Misassembly detection using paired-end sequence reads and optical mapping data
MD Muggli, SJ Puglisi, R Ronen, C Boucher
Bioinformatics 31 (12), i80-i88, 2015
502015
Building large updatable colored de Bruijn graphs via merging
MD Muggli, B Alipanahi, C Boucher
Bioinformatics 35 (14), i51-i60, 2019
442019
Efficient indexed alignment of contigs to optical maps
MD Muggli, SJ Puglisi, C Boucher
Algorithms in Bioinformatics: 14th International Workshop, WABI 2014 …, 2014
432014
Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences
SM Lakin, A Kuhnle, B Alipanahi, NR Noyes, C Dean, M Muggli, ...
Communications biology 2 (1), 294, 2019
292019
Error correcting optical mapping data
K Mukherjee, D Washimkar, MD Muggli, L Salmela, C Boucher
GigaScience 7 (6), giy061, 2018
172018
Fast and accurate correction of optical mapping data via spaced seeds
L Salmela, K Mukherjee, SJ Puglisi, MD Muggli, C Boucher
Bioinformatics 36 (3), 682-689, 2020
102020
Metagenome SNP calling via read-colored de Bruijn graphs
B Alipanahi, MD Muggli, M Jundi, NR Noyes, C Boucher
Bioinformatics 36 (22-23), 5275-5281, 2020
92020
Hierarchical hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences. Commun Biol 2: 294
SM Lakin, A Kuhnle, B Alipanahi, NR Noyes, C Dean, M Muggli, ...
82019
Resistome SNP calling via read colored de Bruijn graphs
B Alipanahi, MD Muggli, M Jundi, N Noyes, C Boucher
bioRxiv, 156174, 2017
82017
Disentangled long-read de Bruijn graphs via optical maps
B Alipanahi, L Salmela, SJ Puglisi, M Muggli, C Boucher
bioRxiv, 094235, 2016
82016
Kohdista: an efficient method to index and query possible Rmap alignments
MD Muggli, SJ Puglisi, C Boucher
Algorithms for Molecular Biology 14, 1-13, 2019
72019
Algorithms in Bioinformatics
M Muggli, S Puglisi, C Boucher
Lecture Notes in Computer Science, 68, 2014
72014
A succinct solution to Rmap alignment
MD Muggli, SJ Puglisi, C Boucher
18th International Workshop on Algorithms in Bioinformatics (WABI 2018), 2018
62018
Succinct colored de Bruijn graphs
K Belk, C Boucher, A Bowe, T Gagie, P Morley, MD Muggli, NR Noyes, ...
bioRxiv, 040071, 2016
62016
Succinct de Bruijn graph construction for massive populations through space-efficient merging
MD Muggli, C Boucher
bioRxiv, 2017
42017
Reducing redundancy in source code
MD Muggli
US Patent 8,683,454, 2014
22014
18th International Workshop on Algorithms in Bioinformatics (WABI 2018)
H Zabeti, T Stephen, B Berger, L Chindelevitch, C Boucher, T Gagie, ...
Schloss Dagstuhl-Leibniz-Zentrum für Informatik GmbH, 2018
2018
Enhancing Space and Time Efficiency of Genomics in Practice through Sophisticated Applications of the FM-Index
MD Muggli
Colorado State University, 2018
2018
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Artículos 1–19