Philip Ashton
Philip Ashton
Malawi Liverpool Wellcome
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MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island
PM Ashton, S Nair, T Dallman, S Rubino, W Rabsch, S Mwaigwisya, ...
Nature biotechnology 33 (3), 296-300, 2015
Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella
J Quick, P Ashton, S Calus, C Chatt, S Gossain, J Hawker, S Nair, K Neal, ...
Genome biology 16 (1), 1-14, 2015
Detection of the plasmid-mediated mcr-1 gene conferring colistin resistance in human and food isolates of Salmonella enterica and Escherichia coli in England …
M Doumith, G Godbole, P Ashton, L Larkin, T Dallman, M Day, M Day, ...
Journal of Antimicrobial Chemotherapy 71 (8), 2300-2305, 2016
Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study
KS Baker, TJ Dallman, PM Ashton, M Day, G Hughes, PD Crook, ...
The Lancet infectious diseases 15 (8), 913-921, 2015
Identification of Salmonella for public health surveillance using whole genome sequencing
PM Ashton, S Nair, TM Peters, JA Bale, DG Powell, A Painset, R Tewolde, ...
PeerJ 4, e1752, 2016
Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues
CJ Meehan, GA Goig, TA Kohl, L Verboven, A Dippenaar, M Ezewudo, ...
NATURE reviews microbiology 17 (9), 533-545, 2019
Whole-Genome Sequencing for National Surveillance of Shiga Toxin–Producing Escherichia coli O157
TJ Dallman, L Byrne, PM Ashton, LA Cowley, NT Perry, G Adak, ...
Clinical Infectious Diseases 61 (3), 305-312, 2015
SnapperDB: a database solution for routine sequencing analysis of bacterial isolates
T Dallman, P Ashton, U Schafer, A Jironkin, A Painset, S Shaaban, ...
Bioinformatics 34 (17), 3028-3029, 2018
Prospective use of whole genome sequencing (WGS) detected a multi-country outbreak of Salmonella Enteritidis
T Inns, PM Ashton, S Herrera-Leon, J Lighthill, S Foulkes, T Jombart, ...
Epidemiology & Infection 145 (2), 289-298, 2017
Applying phylogenomics to understand the emergence of Shiga-toxin-producing Escherichia coli O157: H7 strains causing severe human disease in the UK
TJ Dallman, PM Ashton, L Byrne, NT Perry, L Petrovska, R Ellis, L Allison, ...
Microbial Genomics 1 (3), 2015
Prediction of phenotypic antimicrobial resistance profiles from whole genome sequences of non-typhoidal Salmonella enterica
S Neuert, S Nair, MR Day, M Doumith, PM Ashton, KC Mellor, C Jenkins, ...
Frontiers in microbiology 9, 592, 2018
MOST: a modified MLST typing tool based on short read sequencing
R Tewolde, T Dallman, U Schaefer, CL Sheppard, P Ashton, B Pichon, ...
PeerJ 4, e2308, 2016
Phylogenetic structure of European Salmonella Enteritidis outbreak correlates with national and international egg distribution network
T Dallman, T Inns, T Jombart, P Ashton, N Loman, C Chatt, ...
Microbial genomics 2 (8), 2016
Whole genome sequencing for the retrospective investigation of an outbreak of Salmonella Typhimurium DT 8
PM Ashton, T Peters, L Ameh, R McAleer, S Petrie, S Nair, I Muscat, ...
PLoS currents 7, 2015
Public health surveillance in the UK revolutionises our understanding of the invasive Salmonella Typhimurium epidemic in Africa
PM Ashton, SV Owen, L Kaindama, WPM Rowe, CR Lane, L Larkin, ...
Genome medicine 9 (1), 1-13, 2017
WGS for surveillance of antimicrobial resistance: a pilot study to detect the prevalence and mechanism of resistance to azithromycin in a UK population of non-typhoidal Salmonella
S Nair, P Ashton, M Doumith, S Connell, A Painset, S Mwaigwisya, ...
Journal of Antimicrobial Chemotherapy 71 (12), 3400-3408, 2016
Whole genome sequencing for public health surveillance of Shiga toxin-producing Escherichia coli other than serogroup O157
MA Chattaway, TJ Dallman, A Gentle, MJ Wright, SE Long, PM Ashton, ...
Frontiers in Microbiology 7, 258, 2016
Comparative genomics of Cryptococcus neoformans var. grubii associated with meningitis in HIV infected and uninfected patients in Vietnam
JN Day, S Qihui, LT Thanh, PH Trieu, AD Van, NH Thu, TTH Chau, ...
PLoS neglected tropical diseases 11 (6), e0005628, 2017
Whole genome sequencing demonstrates that geographic variation of Escherichia coli O157 genotypes dominates host association
NJC Strachan, O Rotariu, B Lopes, M MacRae, S Fairley, C Laing, ...
Scientific reports 5 (1), 1-10, 2015
Insight into Shiga toxin genes encoded by Escherichia coli O157 from whole genome sequencing
PM Ashton, N Perry, R Ellis, L Petrovska, J Wain, KA Grant, C Jenkins, ...
PeerJ 3, e739, 2015
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