Shandar Ahmad

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Akinori SaraiProfessor, Kyushu Institute of TechnologyVerified email at sanzo.org
M. Michael GromihaIndian Institute of Technology MadrasVerified email at iitm.ac.in
Kenji MizuguchiOsaka University / National Institutes of Biomedical Innovation, Health and NutritionVerified email at protein.osaka-u.ac.jp
Adeel MalikSangmyung University, SeoulVerified email at procarb.org
Ruth NussinovProfessor and Senior Principal Investigator, National Cancer Institute and Tel Aviv UniversityVerified email at post.tau.ac.il
Marcos J Arauzo-BravoIkerbasque Professor at BioDonostia Health Research Institute, San Sebastian SpainVerified email at biodonostia.org
Michael Fernandez LlamosaMachine Learning SpecialistVerified email at applusrtd.com
Dr. sucheta chauhanResearch Scholar, Jawaharlal Nehru UniversityVerified email at jnu.ac.in
Diego Miranda-Saavedradiego@ifrec.osaka-u.ac.jpVerified email at ifrec.osaka-u.ac.jp
Andrew P HutchinsSouthern University of Science and TechnologyVerified email at sustech.edu.cn
Ken J IshiiInstitute of Medical Science, The University of TokyoVerified email at ims.u-tokyo.ac.jp
Kochetov AVDirector, Institute of Cytology & GeneticsVerified email at bionet.nsc.ru
MANISHA KALSANPhD Computational Biology and Bioinformatics, Jawaharlal Nehru UniversityVerified email at jnu.ac.in
Daron M StandleyProfessor, Osaka UniversityVerified email at biken.osaka-u.ac.jp
Prabakaran PonrajSenior Principal ScientistVerified email at sanofi.com
Michel L. TremblayGoodman Cancer Research Centre Biochemistry McGill UniversityVerified email at mcgill.ca
Ralf JauchThe University of Hong KongVerified email at hku.hk
Yuji SugitaRIKENVerified email at riken.go.jp
Professor Faizan AhmadCentre for Interdisciplinary Research in Basic Sciences, Jamia Millia Islamia, New Delhi -110025, IndiaVerified email at jmi.ac.in
Mohd Firdaus RaihUniversiti Kebangsaan MalaysiaVerified email at mfrlab.org

Shandar Ahmad

Professor of Bioinformatics@SCIS, Jawaharlal Nehru University, New Delhi

Verified email at jnu.ac.in - Homepage

AI/ML methods for Bioinformatics Protein-DNA structural genomics Systems level drug discovery


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information S Ahmad, MM Gromiha, A Sarai Bioinformatics 20 (4), 477-486, 2004	416	2004
PSSM-based prediction of DNA binding sites in proteins S Ahmad, A Sarai BMC bioinformatics 6 (1), 33, 2005	317	2005
ASAView: database and tool for solvent accessibility representation in proteins S Ahmad, M Gromiha, H Fawareh, A Sarai BMC bioinformatics 5 (1), 51, 2004	304	2004
Real value prediction of solvent accessibility from amino acid sequence S Ahmad, MM Gromiha, A Sarai Proteins: Structure, Function, and Bioinformatics 50 (4), 629-635, 2003	236	2003
Moments-based Prediction of DNA-binding Proteins S Ahmad, A Sarai Journal of Molecular Biology 341 (1), 65-71, 2004	167	2004
Structural analysis of cation–π interactions in DNA binding proteins MM Gromiha, C Santhosh, S Ahmad International journal of biological macromolecules 34 (3), 203-211, 2004	135	2004
NETASA: neural network based prediction of solvent accessibility S Ahmad, MM Gromiha Bioinformatics 18 (6), 819-824, 2002	135	2002
Sequence and structural features of carbohydrate binding in proteins and assessment of predictability using a neural network A Malik, S Ahmad BMC Structural Biology 7 (1), 1, 2007	114	2007
RVP-net: online prediction of real valued accessible surface area of proteins from single sequences S Ahmad, MM Gromiha, A Sarai Bioinformatics 19 (14), 1849-1851, 2003	110	2003
Protein–DNA interactions: structural, thermodynamic and clustering patterns of conserved residues in DNA-binding proteins S Ahmad, O Keskin, A Sarai, R Nussinov Nucleic acids research 36 (18), 5922-5932, 2008	104	2008
Partner-aware prediction of interacting residues in protein-protein complexes from sequence data S Ahmad, K Mizuguchi PLoS One 6 (12), e29104, 2011	103	2011
Neural network‐based prediction of transmembrane β‐strand segments in outer membrane proteins MM Gromiha, S Ahmad, M Suwa Journal of computational chemistry 25 (5), 762-767, 2004	99	2004
Distinct transcriptional regulatory modules underlie STAT3’s cell type-independent and cell type-specific functions AP Hutchins, D Diez, Y Takahashi, S Ahmad, R Jauch, ML Tremblay, ... Nucleic acids research 41 (4), 2155-2170, 2013	96	2013
A comparison of shallow and deep learning methods for predicting cognitive performance of stroke patients from MRI lesion images S Chauhan, L Vig, MDFD Grazia, M Corbetta, S Ahmad, M Zorzi Frontiers in Neuroinformatics 2019, 2019	82	2019
uORFs, reinitiation and alternative translation start sites in human mRNAs AV Kochetov, S Ahmad, V Ivanisenko, OA Volkova, NA Kolchanov, ... FEBS letters 582 (9), 1293-1297, 2008	78	2008
Design and training of a neural network for predicting the solvent accessibility of proteins S Ahmad, MM Gromiha Journal of computational chemistry 24 (11), 1313-1320, 2003	77	2003
TMBETA-NET: discrimination and prediction of membrane spanning β-strands in outer membrane proteins MM Gromiha, S Ahmad, M Suwa Nucleic acids research 33 (suppl_2), W164-W167, 2005	74	2005
Sequence-Dependent Conformational Energy of DNA Derived from Molecular Dynamics Simulations: Toward Understanding the Indirect Readout Mechanism in Protein− DNA Recognition MJ Araúzo-Bravo, S Fujii, H Kono, S Ahmad, A Sarai Journal of the American Chemical Society 127 (46), 16074-16089, 2005	65	2005
Profiles of microRNA networks in intestinal epithelial cells in a mouse model of colitis J Lee, EJ Park, Y Yuki, S Ahmad, K Mizuguchi, KJ Ishii, M Shimaoka, ... Scientific reports 5, 18174, 2015	61	2015
Application of residue distribution along the sequence for discriminating outer membrane proteins MM Gromiha, S Ahmad, M Suwa Computational biology and chemistry 29 (2), 135-142, 2005	61	2005

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