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Simon Heumos
Simon Heumos
PhD Student @Quantitative Biology Center Tübingen
Dirección de correo verificada de qbic.uni-tuebingen.de
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A draft human pangenome reference
WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ...
Nature 617 (7960), 312-324, 2023
2952023
Pangenome graphs
JM Eizenga, AM Novak, JA Sibbesen, S Heumos, A Ghaffaari, G Hickey, ...
Annual review of genomics and human genetics 21, 139-162, 2020
1782020
ODGI: understanding pangenome graphs
A Guarracino, S Heumos, S Nahnsen, P Prins, E Garrison
Bioinformatics 38 (13), 3319-3326, 2022
602022
Specific induction of double negative B cells during protective and pathogenic immune responses
C Ruschil, G Gabernet, G Lepennetier, S Heumos, M Kaminski, Z Hracsko, ...
Frontiers in immunology 11, 606338, 2020
512020
Platelets aggregate with neutrophils and promote skin pathology in psoriasis
F Herster, Z Bittner, MC Codrea, NK Archer, M Heister, MW Löffler, ...
Frontiers in immunology 10, 1867, 2019
362019
Central european woolly mammoth population dynamics: Insights from late pleistocene mitochondrial genomes
JA Fellows Yates, DG Drucker, E Reiter, S Heumos, F Welker, SC Münzel, ...
Scientific reports 7 (1), 17714, 2017
362017
Building pangenome graphs
E Garrison, A Guarracino, S Heumos, F Villani, Z Bao, L Tattini, ...
bioRxiv, 2023.04. 05.535718, 2023
342023
Efficient dynamic variation graphs
JM Eizenga, AM Novak, E Kobayashi, F Villani, C Cisar, S Heumos, ...
Bioinformatics 36 (21), 5139-5144, 2020
302020
PSM peptides from community-associated methicillin-resistant Staphylococcus aureus impair the adaptive immune response via modulation of dendritic cell subsets in vivo
JR Richardson, NS Armbruster, M Günter, MS Biljecki, J Klenk, S Heumos, ...
Frontiers in immunology 10, 995, 2019
212019
A perspective on plant phenomics: coupling deep learning and near-infrared spectroscopy
F Vasseur, D Cornet, G Beurier, J Messier, L Rouan, J Bresson, M Ecarnot, ...
Frontiers in Plant Science 13, 836488, 2022
82022
Integrative proteomics highlight presynaptic alterations and c-Jun misactivation as convergent pathomechanisms in ALS
A Aly, ZI Laszlo, S Rajkumar, T Demir, N Hindley, DJ Lamont, J Lehmann, ...
Acta neuropathologica 146 (3), 451-475, 2023
52023
Semantic Variation Graphs: Ontologies for Pangenome Graphs
TT Yokoyama¹, S Heumos, J Seaman, D Trybushnyi, T Pook, ...
22020
Wheeler maps
A Goga, A Baláz, T Gagie, S Heumos, G Navarro, A Petescia, J Sirén
Workshop on Bioinformatics and Computational Biology WBCB 2023, 2023
12023
Wheeler maps
A Baláz, T Gagie, A Goga, S Heumos, G Navarro, A Petescia, J Sirén
arXiv preprint arXiv:2308.09836, 2023
12023
Multiomics surface receptor profiling of the NCI-60 tumor cell panel uncovers novel theranostics for cancer immunotherapy
S Heumos, S Dehn, K Bräutigam, MC Codrea, CM Schürch, UM Lauer, ...
Cancer cell international 22 (1), 311, 2022
12022
Semantic Variation Graphs: Ontologies for Pangenome Graphs
JT Bolleman, TT Yokoyama, S Heumos, J Seaman, D Trybushnyi, T Pook, ...
International Conference on Intelligent Systems for Molecular Biology (2020 …, 2020
12020
Wheeler Maps
A Baláž, T Gagie, A Goga, S Heumos, G Navarro, A Petescia, J Sirén
Latin American Symposium on Theoretical Informatics, 178-192, 2024
2024
nf-core/airrflow: an adaptive immune receptor repertoire analysis workflow employing the Immcantation framework
G Gabernet, S Marquez, R Bjornson, A Peltzer, H Meng, E Aron, NY Lee, ...
bioRxiv, 2024.01. 18.576147, 2024
2024
Pangenome graph layout by Path-Guided Stochastic Gradient Descent
S Heumos, A Guarracino, JNM Schmelzle, J Li, Z Zhang, J Hagmann, ...
bioRxiv, 2023
2023
Succinct dynamic variation graphs
JM Eizenga, AM Novak, E Kobayashi, F Villani, C Cisar, S Heumos, ...
bioRxiv, 2020.04. 23.056317, 2020
2020
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Artículos 1–20