Follow
Ana Teresa Freitas
Ana Teresa Freitas
Professor of Computer Science, INESC-ID, Instituto Superior Técnico, Universidade Técnica de Lisboa
Verified email at inesc-id.pt
Title
Cited by
Cited by
Year
The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae
MC Teixeira, P Monteiro, P Jain, S Tenreiro, AR Fernandes, NP Mira, ...
Nucleic acids research 34 (suppl_1), D446-D451, 2006
6242006
Current tools for the identification of miRNA genes and their targets
ND Mendes, AT Freitas, MF Sagot
Nucleic acids research 37 (8), 2419-2433, 2009
2982009
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae
MC Teixeira, PT Monteiro, JF Guerreiro, JP Gonçalves, NP Mira, ...
Nucleic acids research 42 (D1), D161-D166, 2014
2822014
YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface
D Abdulrehman, PT Monteiro, MC Teixeira, NP Mira, AB Lourenço, ...
Nucleic acids research 39 (suppl_1), D136-D140, 2010
2382010
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae
PT Monteiro, ND Mendes, MC Teixeira, S d’Orey, S Tenreiro, NP Mira, ...
Nucleic acids research 36 (suppl_1), D132-D136, 2007
1962007
Evaluation of reduced susceptibility to quaternary ammonium compounds and bisbiguanides in clinical isolates and laboratory-generated mutants of Staphylococcus aureus
L Furi, ML Ciusa, D Knight, V Di Lorenzo, N Tocci, D Cirasola, L Aragones, ...
Antimicrobial agents and chemotherapy 57 (8), 3488-3497, 2013
1282013
Metagenome enrichment approach used for selection of oil-degrading bacteria consortia for drill cutting residue bioremediation
AB Guerra, JS Oliveira, RCB Silva-Portela, W Araújo, AC Carlos, ...
Environmental Pollution 235, 869-880, 2018
1262018
Using machine learning to improve the prediction of functional outcome in ischemic stroke patients
M Monteiro, AC Fonseca, AT Freitas, TP e Melo, AP Francisco, JM Ferro, ...
IEEE/ACM transactions on computational biology and bioinformatics 15 (6 …, 2018
1252018
A novel resistance mechanism to triclosan that suggests horizontal gene transfer and demonstrates a potential selective pressure for reduced biocide susceptibility in clinical …
ML Ciusa, L Furi, D Knight, F Decorosi, M Fondi, C Raggi, JR Coelho, ...
International Journal of Antimicrobial Agents, 2012
1232012
Temporal logic patterns for querying dynamic models of cellular interaction networks
PT Monteiro, D Ropers, R Mateescu, AT Freitas, H De Jong
Bioinformatics 24 (16), i227-i233, 2008
1152008
The semantic web in translational medicine: current applications and future directions
CM Machado, D Rebholz-Schuhmann, AT Freitas, FM Couto
Briefings in bioinformatics 16 (1), 89-103, 2015
772015
An efficient algorithm for the identification of structured motifs in DNA promoter sequences
AM Carvalho, AT Freitas, AL Oliveira, MF Sagot
IEEE/ACM Transactions on Computational Biology and Bioinformatics 3 (2), 126-140, 2006
762006
Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries
JAP Paiva, E Prat, S Vautrin, MD Santos, H San-Clemente, ...
BMC genomics 12, 1-13, 2011
682011
A highly scalable algorithm for the extraction of cis-regulatory regions
AM Carvalho, AT Freitas, AL Oliveira, MF Sagot
Proceedings Of The 3rd Asia-Pacific Bioinformatics Conference, 273-282, 2005
662005
NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language
LP Coelho, R Alves, P Monteiro, J Huerta-Cepas, AT Freitas, P Bork
Microbiome 7, 1-10, 2019
602019
CSA: an efficient algorithm to improve circular DNA multiple alignment
F Fernandes, L Pereira, AT Freitas
BMC bioinformatics 10, 1-13, 2009
572009
Vitamin D-related polymorphisms and vitamin D levels as risk biomarkers of COVID-19 disease severity
AT Freitas, C Calhau, G Antunes, B Araújo, M Bandeira, S Barreira, ...
Scientific Reports 11 (1), 20837, 2021
50*2021
MUSA: a parameter free algorithm for the identification of biologically significant motifs
ND Mendes, AC Casimiro, PM Santos, I Sa-Correia, AL Oliveira, ...
Bioinformatics 22 (24), 2996-3002, 2006
462006
BioSurfDB: knowledge and algorithms to support biosurfactants and biodegradation studies
JS Oliveira, W Araujo, AI Lopes Sales, A Brito Guerra, SC Silva Araújo, ...
Database 2015, bav033, 2015
452015
Significant differences characterise the correlation coefficients between biocide and antibiotic susceptibility profiles in Staphylococcus aureus
M R Oggioni, J Rosado Coelho, L Furi, D R Knight, C Viti, G Orefici, ...
Current Pharmaceutical Design 21 (16), 2054-2057, 2015
442015
The system can't perform the operation now. Try again later.
Articles 1–20