Quantifying the effect of experimental perturbations at single-cell resolution DB Burkhardt, JS Stanley III, A Tong, AL Perdigoto, SA Gigante, ... Nature biotechnology 39 (5), 619-629, 2021 | 149* | 2021 |
Manifold learning-based methods for analyzing single-cell RNA-sequencing data KR Moon, JS Stanley III, D Burkhardt, D van Dijk, G Wolf, S Krishnaswamy Current Opinion in Systems Biology 7, 36-46, 2018 | 143 | 2018 |
Geometry-Based Data Generation O Lindenbaum, JS Stanley III, G Wolf, S Krishnaswamy NeurIPS 2018, 2018 | 28 | 2018 |
Multiway graph signal processing on tensors: Integrative analysis of irregular geometries JS Stanley, EC Chi, G Mishne IEEE signal processing magazine 37 (6), 160-173, 2020 | 23 | 2020 |
Harmonic alignment JS Stanley III, S Gigante, G Wolf, S Krishnaswamy Proceedings of the 2020 SIAM International Conference on Data Mining, 316-324, 2020 | 18* | 2020 |
Interpretable neuron structuring with graph spectral regularization A Tong, D van Dijk, JS Stanley III, M Amodio, K Yim, R Muhle, J Noonan, ... Advances in Intelligent Data Analysis XVIII: 18th International Symposium on …, 2020 | 10* | 2020 |
Compressed diffusion S Gigante, JS Stanley, N Vu, D van Dijk, KR Moon, G Wolf, ... 2019 13th International conference on Sampling Theory and Applications …, 2019 | 6 | 2019 |
Enhancing experimental signals in single-cell RNA-sequencing data using graph signal processing. bioRxiv 532846 [Preprint]. 28 January 2019 DB Burkhardt, JS Stanley III, AL Perdigoto, SA Gigante, KC Herold, G Wolf, ... | 6 | |
Gene trajectory inference for single-cell data by optimal transport metrics R Qu, X Cheng, E Sefik, JS Stanley III, B Landa, F Strino, S Platt, ... Nature Biotechnology, 1-11, 2024 | 2 | 2024 |
Vertex-Frequency Clustering DB Burkhardt, JS Stanley III, G Wolf, S Krishnaswamy 2019 IEEE Data Science Workshop (DSW), 145-149, 2019 | 1 | 2019 |
Multi-way Graph Signal Processing on Tensors JS Stanley III, EC Chi, G Mishne IEEE SIGNAL PROCESSING MAGAZINE 1053 (5888/20), 2020 | | 2020 |
Geometric Data Organization: Algorithms and Applications JS Stanley III Yale University, 2020 | | 2020 |
Manifold Alignment via Feature Correspondence JS Stanley III, G Wolf, S Krishnaswamy | | 2018 |