Janusz Dutkowski
Janusz Dutkowski
Data4Cure, Inc.
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Rewiring of genetic networks in response to DNA damage
S Bandyopadhyay, M Mehta, D Kuo, MK Sung, R Chuang, EJ Jaehnig, ...
Science 330 (6009), 1385-1389, 2010
A global network of transcription factors, involving E2A, EBF1 and Foxo1, that orchestrates B cell fate
YC Lin, S Jhunjhunwala, C Benner, S Heinz, E Welinder, R Mansson, ...
Nature immunology 11 (7), 635-643, 2010
A gene ontology inferred from molecular networks
J Dutkowski, M Kramer, MA Surma, R Balakrishnan, JM Cherry, ...
Nature biotechnology 31 (1), 38-45, 2013
Boosting signal-to-noise in complex biology: prior knowledge is power
T Ideker, J Dutkowski, L Hood
Cell 144 (6), 860-863, 2011
Multilineage priming of enhancer repertoires precedes commitment to the B and myeloid cell lineages in hematopoietic progenitors
EM Mercer, YC Lin, C Benner, S Jhunjhunwala, J Dutkowski, M Flores, ...
Immunity 35 (3), 413-425, 2011
Identification of functional modules from conserved ancestral protein–protein interactions
J Dutkowski, J Tiuryn
Bioinformatics 23 (13), i149-i158, 2007
Rac2 controls tumor growth, metastasis and M1-M2 macrophage differentiation in vivo
S Joshi, AR Singh, M Zulcic, L Bao, K Messer, T Ideker, J Dutkowski, ...
PloS one 9 (4), e95893, 2014
Protein networks as logic functions in development and cancer
J Dutkowski, T Ideker
PLoS computational biology 7 (9), e1002180, 2011
Improving breast cancer survival analysis through competition-based multidimensional modeling
E Bilal, J Dutkowski, J Guinney, IS Jang, BA Logsdon, G Pandey, ...
PLoS computational biology 9 (5), e1003047, 2013
Inferring gene ontologies from pairwise similarity data
M Kramer, J Dutkowski, M Yu, V Bafna, T Ideker
Bioinformatics 30 (12), i34-i42, 2014
Translation of genotype to phenotype by a hierarchy of cell subsystems
MK Yu, M Kramer, J Dutkowski, R Srivas, K Licon, JF Kreisberg, CT Ng, ...
Cell systems 2 (2), 77-88, 2016
On consensus biomarker selection
J Dutkowski, A Gambin
BMC bioinformatics 8, 1-13, 2007
A method and system for ontology-based dynamic learning and knowledge integration from measurement data and text
JJ Dutkowski
US Patent App. 16/060,400, 2019
A distributed network for intensive longitudinal monitoring in metastatic triple-negative breast cancer
CA Blau, AB Ramirez, S Blau, CC Pritchard, MO Dorschner, ...
Journal of the National Comprehensive Cancer Network 14 (1), 8-17, 2016
Novel data-mining approach identifies biomarkers for diagnosis of Kawasaki disease
AH Tremoulet, J Dutkowski, Y Sato, JT Kanegaye, XB Ling, JC Burns
Pediatric research 78 (5), 547-553, 2015
Phylogeny-guided interaction mapping in seven eukaryotes
J Dutkowski, J Tiuryn
BMC bioinformatics 10, 1-19, 2009
NeXO Web: the NeXO ontology database and visualization platform
J Dutkowski, K Ono, M Kramer, M Yu, D Pratt, B Demchak, T Ideker
Nucleic acids research 42 (D1), D1269-D1274, 2014
MODEVO: exploring modularity and evolution of protein interaction networks
M Woźniak, J Tiuryn, J Dutkowski
Bioinformatics 26 (14), 1790-1791, 2010
Automated reduction and interpretation of multidimensional mass spectra for analysis of complex peptide mixtures
A Gambin, J Dutkowski, J Karczmarski, B Kluge, K Kowalczyk, J Ostrowski, ...
International Journal of Mass Spectrometry 260 (1), 20-30, 2007
Classification of peptide mass fingerprint data by novel no-regret boosting method
A Gambin, E Szczurek, J Dutkowski, M Bakun, M Dadlez
Computers in Biology and Medicine 39 (5), 460-473, 2009
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