Sudhir Kumar

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Koichiro TamuraDirector, Professor, Research Center for Genomics and Bioinformatics, Tokyo Metropolitan UniversityVerified email at tmu.ac.jp
Masatoshi NeiLaura Carnell Professor of Biology, Temple UniversityVerified email at temple.edu
Alan FilipskiArtizona State UniversityVerified email at asu.edu
Joel DudleyInstitute Director and Associate Professor, Icahn School of Medicine at Mount SinaiVerified email at mssm.edu
S. Blair HedgesDirector, Center for Biodiversity; Carnell Professor, Temple UniversityVerified email at temple.edu
Jieping Ye, IEEE Fellow & ACM Distin...University of Michigan & BeikeVerified email at umich.edu
Fabia Ursula BattistuzziOakland UniversityVerified email at oakland.edu
Sankar SubramanianUniversity of the Sunshine CoastVerified email at usc.edu.au
Qiqing TaoInstitute for Genomics and Evolutionary Medicine, Temple UniversityVerified email at temple.edu
Shuiwang Ji, Professor and Presidenti...Department of Computer Science & Engineering, Texas A&M UniversityVerified email at tamu.edu
Sayaka MiuraTemple UniversityVerified email at temple.edu
Michael S. RosenbergVirginia Commonwealth UniversityVerified email at vcu.edu
Maxwell SanderfordVerified email at temple.edu
Sudhindra GadagkarMidwestern UniversityVerified email at midwestern.edu
Michael SuleskiTemple UniversityVerified email at temple.edu
Oscar D. MurilloScientist, Fred Hutchinson Cancer Research CenterVerified email at fredhutch.org
Sergei L Kosakovsky PondProfessor of Biology, Institute for Genomics and Evolutionary Medicine, Temple UniversityVerified email at temple.edu
Sethuraman PanchanathanProfessor of Computer Science and Engineering, Arizona State UniversityVerified email at asu.edu
Li LiuAssociate Professor, Arizona State UniversityVerified email at asu.edu
James ElserFlathead Lake Biological Station of the U of MontanaVerified email at umontana.edu

Sudhir Kumar

Director, iGEM, Carnell Professor of Biology, Temple University

Verified email at temple.edu - Homepage

Molecular Evolution Phylogenetics Bioinformatics Genomics Medicine


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MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods K Tamura, D Peterson, N Peterson, G Stecher, M Nei, S Kumar Molecular biology and evolution 28 (10), 2731-2739, 2011	44858	2011
MEGA6: molecular evolutionary genetics analysis version 6.0 K Tamura, G Stecher, D Peterson, A Filipski, S Kumar Molecular biology and evolution 30 (12), 2725-2729, 2013	42104	2013
MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0 K Tamura, J Dudley, M Nei, S Kumar Molecular biology and evolution 24 (8), 1596-1599, 2007	34412	2007
MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets S Kumar, G Stecher, K Tamura Molecular biology and evolution 33 (7), 1870-1874, 2016	34321	2016
MEGA X: molecular evolutionary genetics analysis across computing platforms S Kumar, G Stecher, M Li, C Knyaz, K Tamura Molecular biology and evolution 35 (6), 1547, 2018	18441	2018
MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment S Kumar, K Tamura, M Nei Briefings in bioinformatics 5 (2), 150-163, 2004	14413	2004
Molecular evolution and phylogenetics M Nei, S Kumar Oxford University Press, 2000	9249	2000
MEGA2: molecular evolutionary genetics analysis software S Kumar, K Tamura, IB Jakobsen, M Nei Bioinformatics 17 (12), 1244-1245, 2001	7774	2001
Prospects for inferring very large phylogenies by using the neighbor-joining method K Tamura, M Nei, S Kumar Proceedings of the National Academy of Sciences of the United States of …, 2004	5308	2004
MEGA: molecular evolutionary genetics analysis software for microcomputers S Kumar, K Tamura, M Nei Bioinformatics 10 (2), 189-191, 1994	4372	1994
MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences S Kumar, M Nei, J Dudley, K Tamura Briefings in bioinformatics 9 (4), 299-306, 2008	3789	2008
A molecular timescale for vertebrate evolution S Kumar, SB Hedges Nature 392 (6679), 917-920, 1998	2253	1998
Evolution of genes and genomes on the Drosophila phylogeny AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ... Nature 450 (7167), 203, 2007	2054	2007
TimeTree: a resource for timelines, timetrees, and divergence times S Kumar, G Stecher, M Suleski, SB Hedges Molecular Biology and Evolution 34 (7), 1812-1819, 2017	1552	2017
TimeTree: a public knowledge-base of divergence times among organisms SB Hedges, J Dudley, S Kumar Bioinformatics 22 (23), 2971-2972, 2006	1183	2006
Tree of life reveals clock-like speciation and diversification SB Hedges, J Marin, M Suleski, M Paymer, S Kumar Molecular biology and evolution 32 (4), 835-845, 2015	840	2015
A new method of inference of ancestral nucleotide and amino acid sequences. Z Yang, S Kumar, M Nei Genetics 141 (4), 1641-1650, 1995	731	1995
Molecular Evolutionary Genetics Analysis (MEGA) for macOS G Stecher, K Tamura, S Kumar Molecular Biology and Evolution 37, 1237–1239, 2020	705	2020
Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks K Tamura, S Subramanian, S Kumar Molecular biology and evolution 21 (1), 36-44, 2004	624	2004
MEGA11: Molecular Evolutionary Genetics Analysis version 11 K Tamura, G Stecher, S Kumar Molecular Biology and Evolution 38 (7), 3022-3027, 2021	617	2021

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