Yin Hu
Yin Hu
Verified email at google.com - Homepage
Title
Cited by
Cited by
Year
Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection
AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ...
Nature Methods 12, 623–630, 2015
2382015
DiffSplice: the genome-wide detection of differential splicing events with RNA-seq
Y Hu, Y Huang, Y Du, CF Orellana, D Singh, AR Johnson, A Monroy, ...
Nucleic acids research 41 (2), e39-e39, 2013
1482013
FDM: a graph-based statistical method to detect differential transcription using RNA-seq data
D Singh, CF Orellana, Y Hu, CD Jones, Y Liu, DY Chiang, J Liu, JF Prins
Bioinformatics 27 (19), 2633-2640, 2011
752011
Robust detection of alternative splicing in a population of single cells
JD Welch, Y Hu, JF Prins
Nucleic acids research 44 (8), e73-e73, 2016
442016
Global optimization of somatic variant identification in cancer genomes with a global community challenge
PC Boutros, AD Ewing, K Ellrott, TC Norman, KK Dang, Y Hu, MR Kellen, ...
Nature genetics 46 (4), 318-319, 2014
402014
A robust method for transcript quantification with RNA-Seq data
Y Huang, Y Hu, CD Jones, JN MacLeod, DY Chiang, Y Liu, JF Prins, J Liu
Journal of Computational Biology 20 (3), 167-187, 2013
352013
A robust method for transcript quantification with RNA-seq data
Y Huang, Y Hu, C Jones, J MacLeod, D Chiang, Y Liu, J Prins, J Liu
Research in Computational Molecular Biology, 127-147, 2012
352012
Unsupervised learning of high-order structural semantics from images
J Gao, Y Hu, J Liu, R Yang
2009 IEEE 12th International Conference on Computer Vision, 2122-2129, 2009
352009
Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection
AY Lee, AD Ewing, K Ellrott, Y Hu, KE Houlahan, JC Bare, SMG Espiritu, ...
Genome biology 19 (1), 1-15, 2018
312018
A probabilistic framework for aligning paired-end RNA-seq data
Y Hu, K Wang, X He, DY Chiang, JF Prins, J Liu
Bioinformatics 26 (16), 1950-1957, 2010
302010
Challenge participants, Kellen MR, Norman TC, Haussler D, Friend SH, Stolovitzky G, Margolin AA, Stuart JM, Boutros PC. Combining tumor genome simulation with crowdsourcing to …
AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ...
Nat Methods 12 (7), 623-30, 2015
142015
ICGC-TCGA DREAM Somatic Mutation Calling Challenge participants
AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi
Kellen, MR, Norman, TC, Haussler, D., Friend, SH, Stolovitzky, G., Margolin …, 2015
82015
A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery
A Creason, D Haan, K Dang, KE Chiotti, M Inkman, A Lamb, T Yu, Y Hu, ...
Cell Systems, 2021
22021
Piecing the puzzle together: a revisit to transcript reconstruction problem in RNA-seq
Y Huang, Y Hu, J Liu
BMC Bioinformatics 15 (Suppl 9), S3, 2014
22014
A Novel Computational Framework for Transcriptome Analysis with RNA-seq Data
Y Hu
12013
Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic variant detection
J Stuart, P Boutros, AYW Lee, K Ellrott, A Margolin, K Dang, K Houlahan, ...
F1000Research 4, 2015
2015
RNA-seq differential splicing analysis of over six hundred colorectal cancer transcriptomes reveals subtype-specific isoform usage
Y Hu, R Dienstmann, J Guinney
CANCER RESEARCH 75 (22), 2015
2015
Abstract B1-61: RNA-seq differential splicing analysis of over six hundred colorectal cancer transcriptomes reveals subtype-specific isoform usage
Y Hu, R Dienstmann, J Guinney
Cancer Research 75 (22 Supplement 2), B1-61-B1-61, 2015
2015
RNA-seq differential transcription analysis of TCGA colorectal cancer (CRC) transcriptomes reveals subtype-specific isoform usage
Y Hu, R Dienstmann, J Guinney
Cancer Research 75 (15 Supplement), 1932-1932, 2015
2015
Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic single nucleotide variant detection
AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, A Margolin, JM Stuart, ...
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Articles 1–20