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Quadram Institute Bioscience
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SignaLink 2–a signaling pathway resource with multi-layered regulatory networks
D Fazekas, M Koltai, D Türei, D Módos, M Pálfy, Z Dúl, L Zsákai, ...
BMC systems biology 7, 1-15, 2013
2212013
Integrated intra‐and intercellular signaling knowledge for multicellular omics analysis
D Türei, A Valdeolivas, L Gul, N Palacio‐Escat, M Klein, O Ivanova, ...
Molecular systems biology 17 (3), e9923, 2021
1752021
The NRF2-related interactome and regulome contain multifunctional proteins and fine-tuned autoregulatory loops
D Papp, K Lenti, D Módos, D Fazekas, Z Dúl, D Türei, L Földvári-Nagy, ...
FEBS letters 586 (13), 1795-1802, 2012
1302012
SARS-CoV-2 causes a different cytokine response compared to other cytokine storm-causing respiratory viruses in severely ill patients
M Olbei, I Hautefort, D Modos, A Treveil, M Poletti, L Gul, ...
Frontiers in immunology 12, 629193, 2021
1122021
Developments in toxicogenomics: understanding and predicting compound-induced toxicity from gene expression data
B Alexander-Dann, LL Pruteanu, E Oerton, N Sharma, I Berindan-Neagoe, ...
Molecular omics 14 (4), 218-236, 2018
1082018
Autophagy Regulatory Network—A systems-level bioinformatics resource for studying the mechanism and regulation of autophagy
D Türei, L Földvári-Nagy, D Fazekas, D Módos, J Kubisch, T Kadlecsik, ...
Autophagy 11 (1), 155-165, 2015
962015
COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms
M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ...
Molecular systems biology 17 (10), e10387, 2021
792021
Cancer stem cells display extremely large evolvability: alternating plastic and rigid networks as a potential mechanism: network models, novel therapeutic target strategies …
P Csermely, J Hódsági, T Korcsmáros, D Módos, ÁR Perez-Lopez, ...
Seminars in cancer biology 30, 42-51, 2015
782015
The emerging role of bile acids in the pathogenesis of inflammatory bowel disease
JP Thomas, D Modos, SM Rushbrook, N Powell, T Korcsmaros
Frontiers in immunology 13, 829525, 2022
612022
NRF2-ome: an integrated web resource to discover protein interaction and regulatory networks of NRF2
D Türei, D Papp, D Fazekas, L Földvári-Nagy, D Módos, K Lenti, ...
Oxidative medicine and cellular longevity 2013, 2013
512013
Extracellular vesicles produced by the human commensal gut bacterium Bacteroides thetaiotaomicron affect host immune pathways in a cell‐type specific manner …
L Gul, D Modos, S Fonseca, M Madgwick, JP Thomas, P Sudhakar, ...
Journal of Extracellular Vesicles 11 (1), e12189, 2022
482022
Adaptation and learning of molecular networks as a description of cancer development at the systems-level: Potential use in anti-cancer therapies
DM Gyurkó, DV Veres, D Módos, K Lenti, T Korcsmáros, P Csermely
Seminars in Cancer Biology 23 (4), 262-269, 2013
362013
Neighbours of cancer-related proteins have key influence on pathogenesis and could increase the drug target space for anticancer therapies
D Módos, KC Bulusu, D Fazekas, J Kubisch, J Brooks, I Marczell, ...
NPJ systems biology and applications 3 (1), 2, 2017
332017
Targets of drugs are generally and targets of drugs having side effects are specifically good spreaders of human interactome perturbations
ÁR Perez-Lopez, KZ Szalay, D Türei, D Módos, K Lenti, T Korcsmáros, ...
Scientific reports 5 (1), 10182, 2015
292015
SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks
L Csabai, D Fazekas, T Kadlecsik, M Szalay-Bekő, B Bohár, M Madgwick, ...
Nucleic acids research 50 (D1), D701-D709, 2022
222022
Transcriptomics predicts compound synergy in drug and natural product treated glioblastoma cells
LL Pruteanu, L Kopanitsa, D Módos, E Kletnieks, E Samarova, A Bender, ...
PLoS One 15 (9), e0239551, 2020
202020
Network biology approaches to achieve precision medicine in inflammatory bowel disease
JP Thomas, D Modos, T Korcsmaros, J Brooks-Warburton
Frontiers in genetics 12, 760501, 2021
122021
ViralLink: An integrated workflow to investigate the effect of SARS-CoV-2 on intracellular signalling and regulatory pathways
A Treveil, B Bohar, P Sudhakar, L Gul, L Csabai, M Olbei, M Poletti, ...
PLOS Computational Biology 17 (2), e1008685, 2021
122021
ADDI: Recommending alternatives for drug–drug interactions with negative health effects
M Allahgholi, H Rahmani, D Javdani, G Weiss, D Módos
Computers in Biology and Medicine 125, 103969, 2020
122020
A systems genomics approach to uncover patient-specific pathogenic pathways and proteins in ulcerative colitis
J Brooks-Warburton, D Modos, P Sudhakar, M Madgwick, JP Thomas, ...
Nature Communications 13 (1), 2299, 2022
92022
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